Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC26.93■■□□□ 1.9
Upf1Q9EPU0 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
Upf1Q9EPU0 Marcksl1-201ENSMUST00000062356 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
Upf1Q9EPU0 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC26.92■■□□□ 1.9
Upf1Q9EPU0 Ccdc84-212ENSMUST00000217351 888 ntTSL 3 BASIC26.92■■□□□ 1.9
Upf1Q9EPU0 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC26.92■■□□□ 1.9
Upf1Q9EPU0 Exosc8-201ENSMUST00000029316 1300 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
Upf1Q9EPU0 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC26.9■■□□□ 1.9
Upf1Q9EPU0 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC26.89■■□□□ 1.9
Upf1Q9EPU0 Appbp2os-202ENSMUST00000206972 447 ntBASIC26.89■■□□□ 1.9
Upf1Q9EPU0 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
Upf1Q9EPU0 Gm6658-202ENSMUST00000209493 1885 ntBASIC26.89■■□□□ 1.89
Upf1Q9EPU0 Gm8495-201ENSMUST00000188740 694 ntBASIC26.88■■□□□ 1.89
Upf1Q9EPU0 Gm7417-201ENSMUST00000192950 473 ntBASIC26.88■■□□□ 1.89
Upf1Q9EPU0 Gm45095-201ENSMUST00000206736 254 ntTSL 5 BASIC26.88■■□□□ 1.89
Upf1Q9EPU0 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
Upf1Q9EPU0 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
Upf1Q9EPU0 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
Upf1Q9EPU0 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Upf1Q9EPU0 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Upf1Q9EPU0 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC26.87■■□□□ 1.89
Upf1Q9EPU0 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
Upf1Q9EPU0 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
Upf1Q9EPU0 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Upf1Q9EPU0 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC26.85■■□□□ 1.89
Upf1Q9EPU0 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Upf1Q9EPU0 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC26.85■■□□□ 1.89
Upf1Q9EPU0 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC26.85■■□□□ 1.89
Upf1Q9EPU0 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC26.84■■□□□ 1.89
Upf1Q9EPU0 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
Upf1Q9EPU0 Timm50-201ENSMUST00000081946 1515 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
Upf1Q9EPU0 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Upf1Q9EPU0 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Upf1Q9EPU0 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
Upf1Q9EPU0 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Upf1Q9EPU0 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Upf1Q9EPU0 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Upf1Q9EPU0 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC26.82■■□□□ 1.88
Upf1Q9EPU0 Gm37847-201ENSMUST00000192163 1497 ntBASIC26.82■■□□□ 1.88
Upf1Q9EPU0 Gm31748-201ENSMUST00000194938 1497 ntBASIC26.82■■□□□ 1.88
Upf1Q9EPU0 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
Upf1Q9EPU0 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
Upf1Q9EPU0 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
Upf1Q9EPU0 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
Upf1Q9EPU0 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
Upf1Q9EPU0 Ctbp1-206ENSMUST00000201575 2091 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
Upf1Q9EPU0 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
Upf1Q9EPU0 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC26.79■■□□□ 1.88
Upf1Q9EPU0 Gm29257-201ENSMUST00000186115 639 ntBASIC26.79■■□□□ 1.88
Upf1Q9EPU0 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC26.78■■□□□ 1.88
Upf1Q9EPU0 Spcs1-207ENSMUST00000228767 1008 ntBASIC26.78■■□□□ 1.88
Upf1Q9EPU0 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC26.78■■□□□ 1.88
Upf1Q9EPU0 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC26.78■■□□□ 1.88
Upf1Q9EPU0 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
Upf1Q9EPU0 Gm12821-201ENSMUST00000120022 600 ntBASIC26.77■■□□□ 1.88
Upf1Q9EPU0 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC26.77■■□□□ 1.88
Upf1Q9EPU0 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
Upf1Q9EPU0 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC26.76■■□□□ 1.88
Upf1Q9EPU0 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC26.76■■□□□ 1.87
Upf1Q9EPU0 Gm2415-201ENSMUST00000128982 1474 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
Upf1Q9EPU0 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
Upf1Q9EPU0 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC26.75■■□□□ 1.87
Upf1Q9EPU0 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
Upf1Q9EPU0 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
Upf1Q9EPU0 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
Upf1Q9EPU0 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
Upf1Q9EPU0 AC117769.4-201ENSMUST00000225679 685 ntBASIC26.73■■□□□ 1.87
Upf1Q9EPU0 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC26.73■■□□□ 1.87
Upf1Q9EPU0 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
Upf1Q9EPU0 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC26.72■■□□□ 1.87
Upf1Q9EPU0 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
Upf1Q9EPU0 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC26.71■■□□□ 1.87
Upf1Q9EPU0 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Upf1Q9EPU0 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC26.7■■□□□ 1.87
Upf1Q9EPU0 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
Upf1Q9EPU0 Gm18284-201ENSMUST00000172604 624 ntBASIC26.69■■□□□ 1.86
Upf1Q9EPU0 Gm27454-201ENSMUST00000185090 204 ntBASIC26.69■■□□□ 1.86
Upf1Q9EPU0 AC140930.3-201ENSMUST00000222935 274 ntBASIC26.69■■□□□ 1.86
Upf1Q9EPU0 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
Upf1Q9EPU0 Gm35065-201ENSMUST00000199206 428 ntTSL 3 BASIC26.68■■□□□ 1.86
Upf1Q9EPU0 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Upf1Q9EPU0 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Upf1Q9EPU0 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC26.68■■□□□ 1.86
Upf1Q9EPU0 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
Upf1Q9EPU0 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC26.66■■□□□ 1.86
Upf1Q9EPU0 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Upf1Q9EPU0 Gm46212-201ENSMUST00000220256 1003 ntTSL 5 BASIC26.66■■□□□ 1.86
Upf1Q9EPU0 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Upf1Q9EPU0 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC26.65■■□□□ 1.86
Upf1Q9EPU0 Gm22238-201ENSMUST00000175222 88 ntBASIC26.65■■□□□ 1.86
Upf1Q9EPU0 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Upf1Q9EPU0 Atp5j-202ENSMUST00000114191 742 ntAPPRIS P1 TSL 5 BASIC26.64■■□□□ 1.86
Upf1Q9EPU0 Gm45417-201ENSMUST00000209533 758 ntBASIC26.64■■□□□ 1.86
Upf1Q9EPU0 Hecw2-202ENSMUST00000097741 1132 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
Upf1Q9EPU0 Atp8a1-203ENSMUST00000113651 808 ntTSL 5 BASIC26.63■■□□□ 1.85
Upf1Q9EPU0 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Upf1Q9EPU0 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
Upf1Q9EPU0 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Upf1Q9EPU0 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Upf1Q9EPU0 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC26.62■■□□□ 1.85
Retrieved 100 of 76,532 protein–RNA pairs in 115.8 ms