Protein–RNA interactions for Protein: P02463

Col4a1, Collagen alpha-1(IV) chain, mousemouse

Predictions only

Length 1,669 aa.

Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col4a1P02463 Pdpk1-203ENSMUST00000115407 1730 ntTSL 5 BASIC28.57■■■□□ 2.16
Col4a1P02463 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC28.57■■■□□ 2.16
Col4a1P02463 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
Col4a1P02463 Dusp2-201ENSMUST00000028846 1617 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
Col4a1P02463 Usp2-206ENSMUST00000176416 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC28.56■■■□□ 2.16
Col4a1P02463 Ntn5-203ENSMUST00000183120 1491 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
Col4a1P02463 Gm22567-201ENSMUST00000175542 342 ntBASIC28.55■■■□□ 2.16
Col4a1P02463 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC28.55■■■□□ 2.16
Col4a1P02463 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC28.54■■■□□ 2.16
Col4a1P02463 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC28.54■■■□□ 2.16
Col4a1P02463 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
Col4a1P02463 Siah1a-201ENSMUST00000045296 1968 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
Col4a1P02463 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC28.54■■■□□ 2.16
Col4a1P02463 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
Col4a1P02463 Gm43592-201ENSMUST00000196922 1165 ntBASIC28.53■■■□□ 2.16
Col4a1P02463 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC28.53■■■□□ 2.16
Col4a1P02463 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
Col4a1P02463 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
Col4a1P02463 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC28.52■■■□□ 2.16
Col4a1P02463 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
Col4a1P02463 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC28.52■■■□□ 2.16
Col4a1P02463 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC28.52■■■□□ 2.16
Col4a1P02463 Gm5522-201ENSMUST00000189483 1242 ntBASIC28.51■■■□□ 2.15
Col4a1P02463 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC28.49■■■□□ 2.15
Col4a1P02463 Jdp2-201ENSMUST00000050687 1643 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
Col4a1P02463 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC28.49■■■□□ 2.15
Col4a1P02463 Tmem11-201ENSMUST00000062677 1457 ntAPPRIS P1 TSL 1 (best) BASIC28.48■■■□□ 2.15
Col4a1P02463 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC28.48■■■□□ 2.15
Col4a1P02463 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC28.47■■■□□ 2.15
Col4a1P02463 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC28.47■■■□□ 2.15
Col4a1P02463 AC122428.3-201ENSMUST00000215551 2290 ntBASIC28.46■■■□□ 2.15
Col4a1P02463 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC28.46■■■□□ 2.15
Col4a1P02463 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC28.46■■■□□ 2.15
Col4a1P02463 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
Col4a1P02463 Tmem106c-201ENSMUST00000064200 1635 ntAPPRIS P1 TSL 1 (best) BASIC28.46■■■□□ 2.15
Col4a1P02463 Dapk2-201ENSMUST00000034944 1772 ntAPPRIS P1 TSL 1 (best) BASIC28.45■■■□□ 2.15
Col4a1P02463 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC28.45■■■□□ 2.15
Col4a1P02463 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC28.45■■■□□ 2.14
Col4a1P02463 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC28.44■■■□□ 2.14
Col4a1P02463 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC28.44■■■□□ 2.14
Col4a1P02463 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC28.43■■■□□ 2.14
Col4a1P02463 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
Col4a1P02463 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC28.43■■■□□ 2.14
Col4a1P02463 Gm16599-201ENSMUST00000148082 1182 ntTSL 1 (best) BASIC28.42■■■□□ 2.14
Col4a1P02463 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC28.42■■■□□ 2.14
Col4a1P02463 Gm43566-201ENSMUST00000196851 808 ntBASIC28.42■■■□□ 2.14
Col4a1P02463 Kcnj6-201ENSMUST00000095873 1773 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
Col4a1P02463 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
Col4a1P02463 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
Col4a1P02463 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC28.4■■■□□ 2.14
Col4a1P02463 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC28.4■■■□□ 2.14
Col4a1P02463 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
Col4a1P02463 Gm15546-201ENSMUST00000122095 826 ntBASIC28.39■■■□□ 2.14
Col4a1P02463 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC28.39■■■□□ 2.14
Col4a1P02463 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
Col4a1P02463 Mpnd-208ENSMUST00000159996 1444 ntAPPRIS ALT2 TSL 5 BASIC28.38■■■□□ 2.13
Col4a1P02463 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC28.38■■■□□ 2.13
Col4a1P02463 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC28.38■■■□□ 2.13
Col4a1P02463 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC28.38■■■□□ 2.13
Col4a1P02463 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
Col4a1P02463 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC28.37■■■□□ 2.13
Col4a1P02463 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC28.36■■■□□ 2.13
Col4a1P02463 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Col4a1P02463 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC28.36■■■□□ 2.13
Col4a1P02463 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Col4a1P02463 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC28.36■■■□□ 2.13
Col4a1P02463 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
Col4a1P02463 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC28.35■■■□□ 2.13
Col4a1P02463 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC28.35■■■□□ 2.13
Col4a1P02463 A430027H14Rik-201ENSMUST00000191809 1467 ntBASIC28.35■■■□□ 2.13
Col4a1P02463 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
Col4a1P02463 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
Col4a1P02463 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
Col4a1P02463 Gm45444-201ENSMUST00000211394 898 ntBASIC28.34■■■□□ 2.13
Col4a1P02463 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC28.33■■■□□ 2.13
Col4a1P02463 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
Col4a1P02463 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC28.33■■■□□ 2.13
Col4a1P02463 Ppia-202ENSMUST00000132846 1170 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
Col4a1P02463 Pcf11-204ENSMUST00000208058 461 ntTSL 5 BASIC28.32■■■□□ 2.12
Col4a1P02463 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC28.32■■■□□ 2.12
Col4a1P02463 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC28.31■■■□□ 2.12
Col4a1P02463 B230377A18Rik-202ENSMUST00000192921 1364 ntBASIC28.31■■■□□ 2.12
Col4a1P02463 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC28.31■■■□□ 2.12
Col4a1P02463 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
Col4a1P02463 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
Col4a1P02463 Nsd1-203ENSMUST00000224156 1149 ntBASIC28.3■■■□□ 2.12
Col4a1P02463 AC093043.1-201ENSMUST00000226700 898 ntBASIC28.29■■■□□ 2.12
Col4a1P02463 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC28.29■■■□□ 2.12
Col4a1P02463 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC28.29■■■□□ 2.12
Col4a1P02463 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC28.28■■■□□ 2.12
Col4a1P02463 Tmem70-201ENSMUST00000065373 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC28.28■■■□□ 2.12
Col4a1P02463 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
Col4a1P02463 Tbc1d10a-206ENSMUST00000180088 1921 ntAPPRIS P2 TSL 1 (best) BASIC28.28■■■□□ 2.12
Col4a1P02463 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC28.28■■■□□ 2.12
Col4a1P02463 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC28.28■■■□□ 2.12
Col4a1P02463 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC28.28■■■□□ 2.12
Col4a1P02463 Sox17-202ENSMUST00000116652 1512 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
Col4a1P02463 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
Col4a1P02463 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.12
Col4a1P02463 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.12
Retrieved 100 of 76,532 protein–RNA pairs in 109.6 ms