Protein–RNA interactions for Protein: J3QNX5

Shisa8, Cysteine-knot AMPAR-modulating protein 39, mousemouse

Predictions only

Length 399 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shisa8J3QNX5 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Shisa8J3QNX5 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Shisa8J3QNX5 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Shisa8J3QNX5 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Shisa8J3QNX5 Hoxa11-201ENSMUST00000048026 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Shisa8J3QNX5 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Shisa8J3QNX5 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Shisa8J3QNX5 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC20.5■□□□□ 0.87
Shisa8J3QNX5 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Shisa8J3QNX5 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
Shisa8J3QNX5 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Shisa8J3QNX5 Lrrc24-201ENSMUST00000036247 1758 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Shisa8J3QNX5 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Shisa8J3QNX5 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Shisa8J3QNX5 Gm45855-201ENSMUST00000212546 880 ntBASIC20.49■□□□□ 0.87
Shisa8J3QNX5 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Shisa8J3QNX5 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Shisa8J3QNX5 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Shisa8J3QNX5 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Shisa8J3QNX5 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Shisa8J3QNX5 Tdp2-203ENSMUST00000223804 1136 ntBASIC20.48■□□□□ 0.87
Shisa8J3QNX5 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Shisa8J3QNX5 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
Shisa8J3QNX5 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Shisa8J3QNX5 P4htm-201ENSMUST00000006853 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Shisa8J3QNX5 Snx7-201ENSMUST00000029639 2021 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Shisa8J3QNX5 Sos2-201ENSMUST00000035773 5607 ntAPPRIS P2 TSL 5 BASIC20.46■□□□□ 0.87
Shisa8J3QNX5 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Shisa8J3QNX5 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Shisa8J3QNX5 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
Shisa8J3QNX5 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
Shisa8J3QNX5 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Shisa8J3QNX5 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Shisa8J3QNX5 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
Shisa8J3QNX5 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC20.45■□□□□ 0.86
Shisa8J3QNX5 Gm4419-202ENSMUST00000226239 1431 ntBASIC20.44■□□□□ 0.86
Shisa8J3QNX5 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC20.44■□□□□ 0.86
Shisa8J3QNX5 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Shisa8J3QNX5 Chst14-201ENSMUST00000099546 2090 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
Shisa8J3QNX5 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Shisa8J3QNX5 Xbp1-201ENSMUST00000063084 2129 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Shisa8J3QNX5 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Shisa8J3QNX5 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
Shisa8J3QNX5 Dmtn-209ENSMUST00000228295 2572 ntBASIC20.43■□□□□ 0.86
Shisa8J3QNX5 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
Shisa8J3QNX5 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Shisa8J3QNX5 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC20.43■□□□□ 0.86
Shisa8J3QNX5 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Shisa8J3QNX5 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Shisa8J3QNX5 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC20.42■□□□□ 0.86
Shisa8J3QNX5 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Shisa8J3QNX5 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Shisa8J3QNX5 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
Shisa8J3QNX5 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Shisa8J3QNX5 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC20.41■□□□□ 0.86
Shisa8J3QNX5 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Shisa8J3QNX5 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Shisa8J3QNX5 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Shisa8J3QNX5 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC20.41■□□□□ 0.86
Shisa8J3QNX5 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Shisa8J3QNX5 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
Shisa8J3QNX5 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
Shisa8J3QNX5 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Shisa8J3QNX5 Slc30a3-201ENSMUST00000031037 2089 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Shisa8J3QNX5 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Shisa8J3QNX5 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
Shisa8J3QNX5 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC20.39■□□□□ 0.86
Shisa8J3QNX5 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC20.39■□□□□ 0.85
Shisa8J3QNX5 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC20.39■□□□□ 0.85
Shisa8J3QNX5 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC20.38■□□□□ 0.85
Shisa8J3QNX5 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
Shisa8J3QNX5 Rhbdl1-201ENSMUST00000026831 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Shisa8J3QNX5 Tmem158-201ENSMUST00000068140 1712 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
Shisa8J3QNX5 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC20.38■□□□□ 0.85
Shisa8J3QNX5 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Shisa8J3QNX5 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC20.37■□□□□ 0.85
Shisa8J3QNX5 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Shisa8J3QNX5 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Shisa8J3QNX5 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Shisa8J3QNX5 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Shisa8J3QNX5 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Shisa8J3QNX5 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC20.35■□□□□ 0.85
Shisa8J3QNX5 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Shisa8J3QNX5 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Shisa8J3QNX5 Gm6934-201ENSMUST00000194780 1905 ntBASIC20.35■□□□□ 0.85
Shisa8J3QNX5 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Shisa8J3QNX5 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Shisa8J3QNX5 Mageb3-201ENSMUST00000104936 2341 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Shisa8J3QNX5 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Shisa8J3QNX5 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Shisa8J3QNX5 Wtap-203ENSMUST00000159551 2060 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
Shisa8J3QNX5 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Shisa8J3QNX5 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC20.34■□□□□ 0.85
Shisa8J3QNX5 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
Shisa8J3QNX5 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC20.33■□□□□ 0.85
Shisa8J3QNX5 Sdccag3-203ENSMUST00000114100 2099 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
Shisa8J3QNX5 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Shisa8J3QNX5 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Shisa8J3QNX5 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Shisa8J3QNX5 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC20.32■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 53.4 ms