Protein–RNA interactions for Protein: A0A075B5Z8

Trav6-1, T cell receptor alpha variable 6-1 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-1A0A075B5Z8 Prph-201ENSMUST00000024249 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trav6-1A0A075B5Z8 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
Trav6-1A0A075B5Z8 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Trav6-1A0A075B5Z8 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trav6-1A0A075B5Z8 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trav6-1A0A075B5Z8 Gm37136-201ENSMUST00000194368 194 ntBASIC18.12■□□□□ 0.49
Trav6-1A0A075B5Z8 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Trav6-1A0A075B5Z8 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Trav6-1A0A075B5Z8 A230087F16Rik-201ENSMUST00000181055 2098 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Trav6-1A0A075B5Z8 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trav6-1A0A075B5Z8 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trav6-1A0A075B5Z8 Msl2-202ENSMUST00000189616 2612 ntTSL 5 BASIC18.11■□□□□ 0.49
Trav6-1A0A075B5Z8 Tgfbrap1-202ENSMUST00000186694 5385 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trav6-1A0A075B5Z8 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Trav6-1A0A075B5Z8 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
Trav6-1A0A075B5Z8 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC18.11■□□□□ 0.49
Trav6-1A0A075B5Z8 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trav6-1A0A075B5Z8 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Trav6-1A0A075B5Z8 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Trav6-1A0A075B5Z8 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC18.1■□□□□ 0.49
Trav6-1A0A075B5Z8 Gm6934-201ENSMUST00000194780 1905 ntBASIC18.1■□□□□ 0.49
Trav6-1A0A075B5Z8 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trav6-1A0A075B5Z8 Slc25a1-201ENSMUST00000003622 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trav6-1A0A075B5Z8 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Trav6-1A0A075B5Z8 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Trav6-1A0A075B5Z8 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Trav6-1A0A075B5Z8 Adgrb1-202ENSMUST00000170845 2704 ntTSL 5 BASIC18.08■□□□□ 0.49
Trav6-1A0A075B5Z8 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
Trav6-1A0A075B5Z8 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Trav6-1A0A075B5Z8 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trav6-1A0A075B5Z8 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
Trav6-1A0A075B5Z8 Triobp-201ENSMUST00000109687 2570 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trav6-1A0A075B5Z8 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC18.07■□□□□ 0.48
Trav6-1A0A075B5Z8 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trav6-1A0A075B5Z8 Grb2-201ENSMUST00000021090 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trav6-1A0A075B5Z8 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trav6-1A0A075B5Z8 Asf1a-201ENSMUST00000020004 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trav6-1A0A075B5Z8 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trav6-1A0A075B5Z8 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Trav6-1A0A075B5Z8 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trav6-1A0A075B5Z8 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trav6-1A0A075B5Z8 Cbln1-202ENSMUST00000169693 1699 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Trav6-1A0A075B5Z8 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trav6-1A0A075B5Z8 Tmem235-201ENSMUST00000093905 1820 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Trav6-1A0A075B5Z8 AC061963.1-201ENSMUST00000213180 1765 ntTSL 5 BASIC18.06■□□□□ 0.48
Trav6-1A0A075B5Z8 Sdccag3-201ENSMUST00000028293 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trav6-1A0A075B5Z8 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trav6-1A0A075B5Z8 Olfm2-203ENSMUST00000215999 1895 ntAPPRIS ALT2 TSL 3 BASIC18.05■□□□□ 0.48
Trav6-1A0A075B5Z8 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trav6-1A0A075B5Z8 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trav6-1A0A075B5Z8 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
Trav6-1A0A075B5Z8 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC18.05■□□□□ 0.48
Trav6-1A0A075B5Z8 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trav6-1A0A075B5Z8 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC18.05■□□□□ 0.48
Trav6-1A0A075B5Z8 Antxr1-204ENSMUST00000204805 2156 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Trav6-1A0A075B5Z8 Ptbp3-208ENSMUST00000172768 2147 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Trav6-1A0A075B5Z8 Cnot6-201ENSMUST00000020624 2498 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Trav6-1A0A075B5Z8 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trav6-1A0A075B5Z8 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Trav6-1A0A075B5Z8 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
Trav6-1A0A075B5Z8 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trav6-1A0A075B5Z8 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Trav6-1A0A075B5Z8 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC18.03■□□□□ 0.48
Trav6-1A0A075B5Z8 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trav6-1A0A075B5Z8 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Trav6-1A0A075B5Z8 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Trav6-1A0A075B5Z8 Rfx5-204ENSMUST00000107255 2350 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Trav6-1A0A075B5Z8 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Trav6-1A0A075B5Z8 Opn3-201ENSMUST00000027809 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Trav6-1A0A075B5Z8 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trav6-1A0A075B5Z8 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trav6-1A0A075B5Z8 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trav6-1A0A075B5Z8 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Trav6-1A0A075B5Z8 Nkain2-201ENSMUST00000092602 558 ntBASIC18.01■□□□□ 0.47
Trav6-1A0A075B5Z8 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trav6-1A0A075B5Z8 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Trav6-1A0A075B5Z8 Gm20208-202ENSMUST00000219905 1528 ntTSL 1 (best) BASIC18■□□□□ 0.47
Trav6-1A0A075B5Z8 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC18■□□□□ 0.47
Trav6-1A0A075B5Z8 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trav6-1A0A075B5Z8 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Trav6-1A0A075B5Z8 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Trav6-1A0A075B5Z8 St7-209ENSMUST00000115420 2094 ntTSL 5 BASIC18■□□□□ 0.47
Trav6-1A0A075B5Z8 Gm11542-201ENSMUST00000126480 1511 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Trav6-1A0A075B5Z8 Kcnk2-205ENSMUST00000192723 1642 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trav6-1A0A075B5Z8 Siah1b-202ENSMUST00000071667 1712 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trav6-1A0A075B5Z8 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
Trav6-1A0A075B5Z8 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trav6-1A0A075B5Z8 Fbxl5-205ENSMUST00000121736 2144 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Trav6-1A0A075B5Z8 Trim9-208ENSMUST00000221370 2393 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Trav6-1A0A075B5Z8 Syt6-204ENSMUST00000118563 1843 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Trav6-1A0A075B5Z8 Gimap1-205ENSMUST00000204168 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trav6-1A0A075B5Z8 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trav6-1A0A075B5Z8 Rbm45-201ENSMUST00000046389 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trav6-1A0A075B5Z8 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trav6-1A0A075B5Z8 Rhou-201ENSMUST00000045487 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trav6-1A0A075B5Z8 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
Trav6-1A0A075B5Z8 Slc16a11-205ENSMUST00000126388 1938 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
Trav6-1A0A075B5Z8 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Trav6-1A0A075B5Z8 Gm13042-201ENSMUST00000119244 1955 ntBASIC17.96■□□□□ 0.47
Trav6-1A0A075B5Z8 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 19.8 ms