Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
LSM1O15116 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LSM1O15116 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LSM1O15116 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LSM1O15116 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
LSM1O15116 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC18.05■□□□□ 0.48
LSM1O15116 DERL1-203ENST00000419562 918 ntTSL 2 BASIC18.05■□□□□ 0.48
LSM1O15116 PPP1R14BP5-201ENST00000440334 435 ntBASIC18.05■□□□□ 0.48
LSM1O15116 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LSM1O15116 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LSM1O15116 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC18.05■□□□□ 0.48
LSM1O15116 DUS1L-202ENST00000354321 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LSM1O15116 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LSM1O15116 ABALON-201ENST00000629058 1903 ntBASIC18.05■□□□□ 0.48
LSM1O15116 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
LSM1O15116 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.05■□□□□ 0.48
LSM1O15116 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
LSM1O15116 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
LSM1O15116 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.04■□□□□ 0.48
LSM1O15116 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LSM1O15116 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC18.04■□□□□ 0.48
LSM1O15116 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LSM1O15116 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LSM1O15116 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
LSM1O15116 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
LSM1O15116 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
LSM1O15116 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
LSM1O15116 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC18.04■□□□□ 0.48
LSM1O15116 AC091390.4-202ENST00000476426 537 ntBASIC18.04■□□□□ 0.48
LSM1O15116 RPS2P4-201ENST00000476944 856 ntBASIC18.04■□□□□ 0.48
LSM1O15116 ABBA01031674.1-201ENST00000635145 728 ntBASIC18.04■□□□□ 0.48
LSM1O15116 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.04■□□□□ 0.48
LSM1O15116 PTK6-201ENST00000217185 2401 ntTSL 2 BASIC18.04■□□□□ 0.48
LSM1O15116 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.04■□□□□ 0.48
LSM1O15116 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LSM1O15116 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
LSM1O15116 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
LSM1O15116 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.04■□□□□ 0.48
LSM1O15116 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC18.04■□□□□ 0.48
LSM1O15116 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC18.04■□□□□ 0.48
LSM1O15116 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.03■□□□□ 0.48
LSM1O15116 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.03■□□□□ 0.48
LSM1O15116 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.03■□□□□ 0.48
LSM1O15116 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LSM1O15116 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
LSM1O15116 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
LSM1O15116 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
LSM1O15116 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LSM1O15116 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
LSM1O15116 HTR7P1-201ENST00000538670 1336 ntBASIC18.03■□□□□ 0.48
LSM1O15116 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LSM1O15116 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LSM1O15116 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
LSM1O15116 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LSM1O15116 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC18.03■□□□□ 0.48
LSM1O15116 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LSM1O15116 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LSM1O15116 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LSM1O15116 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LSM1O15116 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LSM1O15116 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LSM1O15116 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LSM1O15116 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
LSM1O15116 KSR1P1-201ENST00000446298 240 ntBASIC18.03■□□□□ 0.48
LSM1O15116 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC18.03■□□□□ 0.48
LSM1O15116 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LSM1O15116 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC18.03■□□□□ 0.48
LSM1O15116 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.03■□□□□ 0.48
LSM1O15116 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
LSM1O15116 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC18.03■□□□□ 0.48
LSM1O15116 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
LSM1O15116 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LSM1O15116 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
LSM1O15116 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.03■□□□□ 0.48
LSM1O15116 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LSM1O15116 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LSM1O15116 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.03■□□□□ 0.48
LSM1O15116 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC18.03■□□□□ 0.48
LSM1O15116 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
LSM1O15116 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LSM1O15116 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
LSM1O15116 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC18.03■□□□□ 0.48
LSM1O15116 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
LSM1O15116 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
LSM1O15116 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC18.02■□□□□ 0.48
LSM1O15116 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.48
LSM1O15116 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
LSM1O15116 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
LSM1O15116 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LSM1O15116 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
LSM1O15116 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LSM1O15116 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LSM1O15116 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LSM1O15116 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LSM1O15116 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LSM1O15116 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
LSM1O15116 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
LSM1O15116 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
LSM1O15116 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
LSM1O15116 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC18.02■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms