Protein–RNA interactions for Protein: Q9EQM3

Nkx2-4, Homeobox protein Nkx-2.4, mousemouse

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-4Q9EQM3 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC24.27■■□□□ 1.48
Nkx2-4Q9EQM3 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC24.27■■□□□ 1.48
Nkx2-4Q9EQM3 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC24.27■■□□□ 1.48
Nkx2-4Q9EQM3 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC24.26■■□□□ 1.47
Nkx2-4Q9EQM3 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC24.26■■□□□ 1.47
Nkx2-4Q9EQM3 Rps24-207ENSMUST00000224568 714 ntBASIC24.26■■□□□ 1.47
Nkx2-4Q9EQM3 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
Nkx2-4Q9EQM3 Gm15820-201ENSMUST00000201566 728 ntBASIC24.25■■□□□ 1.47
Nkx2-4Q9EQM3 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC24.25■■□□□ 1.47
Nkx2-4Q9EQM3 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
Nkx2-4Q9EQM3 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC24.24■■□□□ 1.47
Nkx2-4Q9EQM3 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Nkx2-4Q9EQM3 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
Nkx2-4Q9EQM3 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
Nkx2-4Q9EQM3 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
Nkx2-4Q9EQM3 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
Nkx2-4Q9EQM3 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
Nkx2-4Q9EQM3 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Nkx2-4Q9EQM3 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC24.21■■□□□ 1.47
Nkx2-4Q9EQM3 Terc-201ENSMUST00000082862 423 ntBASIC24.21■■□□□ 1.47
Nkx2-4Q9EQM3 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Nkx2-4Q9EQM3 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC24.2■■□□□ 1.46
Nkx2-4Q9EQM3 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC24.2■■□□□ 1.46
Nkx2-4Q9EQM3 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC24.2■■□□□ 1.46
Nkx2-4Q9EQM3 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC24.19■■□□□ 1.46
Nkx2-4Q9EQM3 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC24.19■■□□□ 1.46
Nkx2-4Q9EQM3 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC24.19■■□□□ 1.46
Nkx2-4Q9EQM3 Eif4ebp1-201ENSMUST00000033880 1997 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Nkx2-4Q9EQM3 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Nkx2-4Q9EQM3 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
Nkx2-4Q9EQM3 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
Nkx2-4Q9EQM3 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
Nkx2-4Q9EQM3 AC153911.1-201ENSMUST00000220378 758 ntBASIC24.17■■□□□ 1.46
Nkx2-4Q9EQM3 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC24.17■■□□□ 1.46
Nkx2-4Q9EQM3 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
Nkx2-4Q9EQM3 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC24.16■■□□□ 1.46
Nkx2-4Q9EQM3 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC24.15■■□□□ 1.46
Nkx2-4Q9EQM3 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC24.15■■□□□ 1.46
Nkx2-4Q9EQM3 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
Nkx2-4Q9EQM3 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
Nkx2-4Q9EQM3 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
Nkx2-4Q9EQM3 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
Nkx2-4Q9EQM3 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
Nkx2-4Q9EQM3 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC24.13■■□□□ 1.45
Nkx2-4Q9EQM3 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC24.13■■□□□ 1.45
Nkx2-4Q9EQM3 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
Nkx2-4Q9EQM3 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC24.13■■□□□ 1.45
Nkx2-4Q9EQM3 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC24.11■■□□□ 1.45
Nkx2-4Q9EQM3 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
Nkx2-4Q9EQM3 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
Nkx2-4Q9EQM3 Gm13238-201ENSMUST00000117655 780 ntBASIC24.11■■□□□ 1.45
Nkx2-4Q9EQM3 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC24.11■■□□□ 1.45
Nkx2-4Q9EQM3 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC24.11■■□□□ 1.45
Nkx2-4Q9EQM3 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC24.1■■□□□ 1.45
Nkx2-4Q9EQM3 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
Nkx2-4Q9EQM3 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC24.1■■□□□ 1.45
Nkx2-4Q9EQM3 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC24.1■■□□□ 1.45
Nkx2-4Q9EQM3 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
Nkx2-4Q9EQM3 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC24.09■■□□□ 1.45
Nkx2-4Q9EQM3 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
Nkx2-4Q9EQM3 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC24.09■■□□□ 1.45
Nkx2-4Q9EQM3 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC24.09■■□□□ 1.45
Nkx2-4Q9EQM3 Gm14117-201ENSMUST00000122417 843 ntBASIC24.08■■□□□ 1.45
Nkx2-4Q9EQM3 Gm45102-201ENSMUST00000207427 857 ntBASIC24.08■■□□□ 1.45
Nkx2-4Q9EQM3 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
Nkx2-4Q9EQM3 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
Nkx2-4Q9EQM3 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
Nkx2-4Q9EQM3 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC24.07■■□□□ 1.44
Nkx2-4Q9EQM3 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC24.07■■□□□ 1.44
Nkx2-4Q9EQM3 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC24.07■■□□□ 1.44
Nkx2-4Q9EQM3 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
Nkx2-4Q9EQM3 Nsd1-203ENSMUST00000224156 1149 ntBASIC24.06■■□□□ 1.44
Nkx2-4Q9EQM3 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
Nkx2-4Q9EQM3 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Nkx2-4Q9EQM3 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC24.05■■□□□ 1.44
Nkx2-4Q9EQM3 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Nkx2-4Q9EQM3 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC24.05■■□□□ 1.44
Nkx2-4Q9EQM3 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC24.05■■□□□ 1.44
Nkx2-4Q9EQM3 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC24.05■■□□□ 1.44
Nkx2-4Q9EQM3 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC24.05■■□□□ 1.44
Nkx2-4Q9EQM3 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC24.05■■□□□ 1.44
Nkx2-4Q9EQM3 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
Nkx2-4Q9EQM3 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
Nkx2-4Q9EQM3 Gm43566-201ENSMUST00000196851 808 ntBASIC24.04■■□□□ 1.44
Nkx2-4Q9EQM3 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC24.03■■□□□ 1.44
Nkx2-4Q9EQM3 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC24.03■■□□□ 1.44
Nkx2-4Q9EQM3 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC24.03■■□□□ 1.44
Nkx2-4Q9EQM3 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC24.02■■□□□ 1.44
Nkx2-4Q9EQM3 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC24.02■■□□□ 1.44
Nkx2-4Q9EQM3 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
Nkx2-4Q9EQM3 Camk2n2-201ENSMUST00000052939 1291 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
Nkx2-4Q9EQM3 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC24.02■■□□□ 1.44
Nkx2-4Q9EQM3 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Nkx2-4Q9EQM3 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC24.01■■□□□ 1.43
Nkx2-4Q9EQM3 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
Nkx2-4Q9EQM3 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC24.01■■□□□ 1.43
Nkx2-4Q9EQM3 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Nkx2-4Q9EQM3 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC24.01■■□□□ 1.43
Nkx2-4Q9EQM3 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Nkx2-4Q9EQM3 Gm44428-201ENSMUST00000204474 874 ntBASIC24.01■■□□□ 1.43
Retrieved 100 of 76,532 protein–RNA pairs in 15.3 ms