Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Rnf220Q6PDX6 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Rnf220Q6PDX6 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Rnf220Q6PDX6 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Rnf220Q6PDX6 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Rnf220Q6PDX6 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Rnf220Q6PDX6 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Rnf220Q6PDX6 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC21.63■■□□□ 1.05
Rnf220Q6PDX6 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Rnf220Q6PDX6 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Rnf220Q6PDX6 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Rnf220Q6PDX6 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC21.62■■□□□ 1.05
Rnf220Q6PDX6 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Rnf220Q6PDX6 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC21.61■■□□□ 1.05
Rnf220Q6PDX6 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Rnf220Q6PDX6 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Rnf220Q6PDX6 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Rnf220Q6PDX6 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Rnf220Q6PDX6 Eml2-202ENSMUST00000117338 2765 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
Rnf220Q6PDX6 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC21.59■■□□□ 1.05
Rnf220Q6PDX6 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Rnf220Q6PDX6 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Rnf220Q6PDX6 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Rnf220Q6PDX6 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
Rnf220Q6PDX6 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
Rnf220Q6PDX6 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
Rnf220Q6PDX6 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC21.58■■□□□ 1.04
Rnf220Q6PDX6 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
Rnf220Q6PDX6 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Rnf220Q6PDX6 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Rnf220Q6PDX6 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Rnf220Q6PDX6 Rab21-201ENSMUST00000020343 4602 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Rnf220Q6PDX6 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Rnf220Q6PDX6 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Rnf220Q6PDX6 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Rnf220Q6PDX6 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Rnf220Q6PDX6 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Rnf220Q6PDX6 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
Rnf220Q6PDX6 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
Rnf220Q6PDX6 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC21.56■■□□□ 1.04
Rnf220Q6PDX6 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Rnf220Q6PDX6 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Rnf220Q6PDX6 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Rnf220Q6PDX6 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Rnf220Q6PDX6 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Rnf220Q6PDX6 Mat2b-201ENSMUST00000040167 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Rnf220Q6PDX6 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Rnf220Q6PDX6 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Rnf220Q6PDX6 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
Rnf220Q6PDX6 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Rnf220Q6PDX6 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
Rnf220Q6PDX6 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC21.52■■□□□ 1.04
Rnf220Q6PDX6 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Rnf220Q6PDX6 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Rnf220Q6PDX6 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
Rnf220Q6PDX6 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Rnf220Q6PDX6 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Rnf220Q6PDX6 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Rnf220Q6PDX6 Lrrc14-201ENSMUST00000036423 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Rnf220Q6PDX6 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Rnf220Q6PDX6 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Rnf220Q6PDX6 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC21.48■■□□□ 1.03
Rnf220Q6PDX6 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Rnf220Q6PDX6 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Rnf220Q6PDX6 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Rnf220Q6PDX6 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Rnf220Q6PDX6 Grap-201ENSMUST00000004959 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Rnf220Q6PDX6 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
Rnf220Q6PDX6 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Rnf220Q6PDX6 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Rnf220Q6PDX6 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Rnf220Q6PDX6 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC21.46■■□□□ 1.03
Rnf220Q6PDX6 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Rnf220Q6PDX6 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Rnf220Q6PDX6 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Rnf220Q6PDX6 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
Rnf220Q6PDX6 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC21.45■■□□□ 1.02
Rnf220Q6PDX6 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
Rnf220Q6PDX6 Slc35a3-202ENSMUST00000120120 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Rnf220Q6PDX6 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Rnf220Q6PDX6 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Rnf220Q6PDX6 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
Rnf220Q6PDX6 BC037034-201ENSMUST00000048421 2490 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Rnf220Q6PDX6 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC21.44■■□□□ 1.02
Rnf220Q6PDX6 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Rnf220Q6PDX6 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Rnf220Q6PDX6 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Rnf220Q6PDX6 Frmd5-201ENSMUST00000110592 2222 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
Rnf220Q6PDX6 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Rnf220Q6PDX6 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Rnf220Q6PDX6 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Rnf220Q6PDX6 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Rnf220Q6PDX6 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Rnf220Q6PDX6 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Rnf220Q6PDX6 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Rnf220Q6PDX6 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Rnf220Q6PDX6 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Rnf220Q6PDX6 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Rnf220Q6PDX6 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Rnf220Q6PDX6 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
Retrieved 100 of 76,532 protein–RNA pairs in 17.2 ms