Protein–RNA interactions for Protein: Q5U430

Ubr3, E3 ubiquitin-protein ligase UBR3, mousemouse

Predictions only

Length 1,889 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubr3Q5U430 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC29.22■■■□□ 2.27
Ubr3Q5U430 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC29.22■■■□□ 2.27
Ubr3Q5U430 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC29.21■■■□□ 2.27
Ubr3Q5U430 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC29.21■■■□□ 2.27
Ubr3Q5U430 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC29.2■■■□□ 2.27
Ubr3Q5U430 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
Ubr3Q5U430 Terc-201ENSMUST00000082862 423 ntBASIC29.19■■■□□ 2.26
Ubr3Q5U430 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
Ubr3Q5U430 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
Ubr3Q5U430 AC153911.1-201ENSMUST00000220378 758 ntBASIC29.18■■■□□ 2.26
Ubr3Q5U430 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
Ubr3Q5U430 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
Ubr3Q5U430 Gm15546-201ENSMUST00000122095 826 ntBASIC29.17■■■□□ 2.26
Ubr3Q5U430 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
Ubr3Q5U430 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC29.17■■■□□ 2.26
Ubr3Q5U430 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
Ubr3Q5U430 Gm14121-201ENSMUST00000121441 1380 ntBASIC29.15■■■□□ 2.26
Ubr3Q5U430 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
Ubr3Q5U430 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
Ubr3Q5U430 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC29.14■■■□□ 2.26
Ubr3Q5U430 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC29.14■■■□□ 2.26
Ubr3Q5U430 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC29.14■■■□□ 2.26
Ubr3Q5U430 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC29.14■■■□□ 2.26
Ubr3Q5U430 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC29.13■■■□□ 2.25
Ubr3Q5U430 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC29.12■■■□□ 2.25
Ubr3Q5U430 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
Ubr3Q5U430 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC29.12■■■□□ 2.25
Ubr3Q5U430 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
Ubr3Q5U430 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
Ubr3Q5U430 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC29.1■■■□□ 2.25
Ubr3Q5U430 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC29.1■■■□□ 2.25
Ubr3Q5U430 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
Ubr3Q5U430 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC29.09■■■□□ 2.25
Ubr3Q5U430 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
Ubr3Q5U430 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC29.07■■■□□ 2.24
Ubr3Q5U430 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
Ubr3Q5U430 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC29.07■■■□□ 2.24
Ubr3Q5U430 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC29.06■■■□□ 2.24
Ubr3Q5U430 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC29.06■■■□□ 2.24
Ubr3Q5U430 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC29.06■■■□□ 2.24
Ubr3Q5U430 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
Ubr3Q5U430 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
Ubr3Q5U430 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
Ubr3Q5U430 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
Ubr3Q5U430 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC29.06■■■□□ 2.24
Ubr3Q5U430 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
Ubr3Q5U430 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC29.04■■■□□ 2.24
Ubr3Q5U430 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC29.04■■■□□ 2.24
Ubr3Q5U430 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
Ubr3Q5U430 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC29.04■■■□□ 2.24
Ubr3Q5U430 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
Ubr3Q5U430 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC29.04■■■□□ 2.24
Ubr3Q5U430 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
Ubr3Q5U430 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC29.02■■■□□ 2.24
Ubr3Q5U430 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC29.02■■■□□ 2.24
Ubr3Q5U430 Gm43566-201ENSMUST00000196851 808 ntBASIC29.01■■■□□ 2.23
Ubr3Q5U430 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC29.01■■■□□ 2.23
Ubr3Q5U430 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC29.01■■■□□ 2.23
Ubr3Q5U430 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC29■■■□□ 2.23
Ubr3Q5U430 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
Ubr3Q5U430 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC29■■■□□ 2.23
Ubr3Q5U430 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
Ubr3Q5U430 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
Ubr3Q5U430 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC28.99■■■□□ 2.23
Ubr3Q5U430 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
Ubr3Q5U430 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC28.98■■■□□ 2.23
Ubr3Q5U430 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC28.98■■■□□ 2.23
Ubr3Q5U430 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC28.98■■■□□ 2.23
Ubr3Q5U430 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
Ubr3Q5U430 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC28.98■■■□□ 2.23
Ubr3Q5U430 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
Ubr3Q5U430 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
Ubr3Q5U430 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC28.97■■■□□ 2.23
Ubr3Q5U430 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC28.97■■■□□ 2.23
Ubr3Q5U430 Gng12-206ENSMUST00000114227 1125 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
Ubr3Q5U430 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC28.97■■■□□ 2.23
Ubr3Q5U430 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
Ubr3Q5U430 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC28.97■■■□□ 2.23
Ubr3Q5U430 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC28.96■■■□□ 2.23
Ubr3Q5U430 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC28.95■■■□□ 2.23
Ubr3Q5U430 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC28.95■■■□□ 2.23
Ubr3Q5U430 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC28.95■■■□□ 2.23
Ubr3Q5U430 AC093043.1-201ENSMUST00000226700 898 ntBASIC28.95■■■□□ 2.23
Ubr3Q5U430 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC28.95■■■□□ 2.23
Ubr3Q5U430 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC28.94■■■□□ 2.22
Ubr3Q5U430 Gm13238-201ENSMUST00000117655 780 ntBASIC28.94■■■□□ 2.22
Ubr3Q5U430 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC28.94■■■□□ 2.22
Ubr3Q5U430 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC28.93■■■□□ 2.22
Ubr3Q5U430 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC28.93■■■□□ 2.22
Ubr3Q5U430 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC28.92■■■□□ 2.22
Ubr3Q5U430 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC28.91■■■□□ 2.22
Ubr3Q5U430 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC28.91■■■□□ 2.22
Ubr3Q5U430 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC28.91■■■□□ 2.22
Ubr3Q5U430 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
Ubr3Q5U430 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
Ubr3Q5U430 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
Ubr3Q5U430 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
Ubr3Q5U430 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC28.9■■■□□ 2.22
Ubr3Q5U430 Syce2-202ENSMUST00000136026 1686 ntAPPRIS P3 TSL 1 (best) BASIC28.9■■■□□ 2.22
Ubr3Q5U430 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC28.9■■■□□ 2.22
Retrieved 100 of 76,532 protein–RNA pairs in 56 ms