Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC27.02■■□□□ 1.92
Limch1Q3UH68 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC27.01■■□□□ 1.91
Limch1Q3UH68 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
Limch1Q3UH68 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
Limch1Q3UH68 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
Limch1Q3UH68 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC27■■□□□ 1.91
Limch1Q3UH68 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
Limch1Q3UH68 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
Limch1Q3UH68 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC26.99■■□□□ 1.91
Limch1Q3UH68 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
Limch1Q3UH68 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC26.99■■□□□ 1.91
Limch1Q3UH68 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
Limch1Q3UH68 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC26.99■■□□□ 1.91
Limch1Q3UH68 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
Limch1Q3UH68 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC26.98■■□□□ 1.91
Limch1Q3UH68 Gm14121-201ENSMUST00000121441 1380 ntBASIC26.97■■□□□ 1.91
Limch1Q3UH68 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC26.97■■□□□ 1.91
Limch1Q3UH68 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC26.97■■□□□ 1.91
Limch1Q3UH68 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
Limch1Q3UH68 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
Limch1Q3UH68 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
Limch1Q3UH68 Egr4-201ENSMUST00000095759 2148 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.91
Limch1Q3UH68 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC26.95■■□□□ 1.91
Limch1Q3UH68 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC26.95■■□□□ 1.9
Limch1Q3UH68 A230005M16Rik-201ENSMUST00000137661 1605 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
Limch1Q3UH68 Tmpo-203ENSMUST00000092219 1854 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
Limch1Q3UH68 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
Limch1Q3UH68 Etfa-201ENSMUST00000034866 1392 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
Limch1Q3UH68 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
Limch1Q3UH68 AC167019.3-201ENSMUST00000228225 1266 ntBASIC26.91■■□□□ 1.9
Limch1Q3UH68 Gm6311-201ENSMUST00000073790 878 ntBASIC26.91■■□□□ 1.9
Limch1Q3UH68 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC26.91■■□□□ 1.9
Limch1Q3UH68 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC26.91■■□□□ 1.9
Limch1Q3UH68 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
Limch1Q3UH68 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.9
Limch1Q3UH68 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC26.89■■□□□ 1.9
Limch1Q3UH68 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
Limch1Q3UH68 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC26.88■■□□□ 1.89
Limch1Q3UH68 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC26.88■■□□□ 1.89
Limch1Q3UH68 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
Limch1Q3UH68 Cap2-205ENSMUST00000225824 1634 ntBASIC26.87■■□□□ 1.89
Limch1Q3UH68 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC26.87■■□□□ 1.89
Limch1Q3UH68 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC26.87■■□□□ 1.89
Limch1Q3UH68 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
Limch1Q3UH68 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
Limch1Q3UH68 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC26.86■■□□□ 1.89
Limch1Q3UH68 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC26.86■■□□□ 1.89
Limch1Q3UH68 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC26.86■■□□□ 1.89
Limch1Q3UH68 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC26.86■■□□□ 1.89
Limch1Q3UH68 Artn-201ENSMUST00000070816 2177 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
Limch1Q3UH68 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
Limch1Q3UH68 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
Limch1Q3UH68 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC26.85■■□□□ 1.89
Limch1Q3UH68 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC26.85■■□□□ 1.89
Limch1Q3UH68 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
Limch1Q3UH68 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC26.85■■□□□ 1.89
Limch1Q3UH68 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC26.84■■□□□ 1.89
Limch1Q3UH68 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Limch1Q3UH68 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Limch1Q3UH68 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC26.83■■□□□ 1.89
Limch1Q3UH68 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
Limch1Q3UH68 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Limch1Q3UH68 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Limch1Q3UH68 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
Limch1Q3UH68 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
Limch1Q3UH68 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC26.81■■□□□ 1.88
Limch1Q3UH68 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC26.81■■□□□ 1.88
Limch1Q3UH68 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC26.81■■□□□ 1.88
Limch1Q3UH68 Gm37136-201ENSMUST00000194368 194 ntBASIC26.81■■□□□ 1.88
Limch1Q3UH68 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
Limch1Q3UH68 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC26.8■■□□□ 1.88
Limch1Q3UH68 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
Limch1Q3UH68 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC26.8■■□□□ 1.88
Limch1Q3UH68 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
Limch1Q3UH68 Lor-201ENSMUST00000058150 1779 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
Limch1Q3UH68 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
Limch1Q3UH68 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC26.79■■□□□ 1.88
Limch1Q3UH68 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC26.78■■□□□ 1.88
Limch1Q3UH68 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC26.78■■□□□ 1.88
Limch1Q3UH68 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Limch1Q3UH68 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
Limch1Q3UH68 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC26.78■■□□□ 1.88
Limch1Q3UH68 Vegfb-202ENSMUST00000130048 1158 ntAPPRIS ALT2 TSL 1 (best) BASIC26.77■■□□□ 1.88
Limch1Q3UH68 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC26.76■■□□□ 1.87
Limch1Q3UH68 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
Limch1Q3UH68 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC26.76■■□□□ 1.87
Limch1Q3UH68 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC26.76■■□□□ 1.87
Limch1Q3UH68 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
Limch1Q3UH68 Rab26-202ENSMUST00000061764 1291 ntTSL 2 BASIC26.75■■□□□ 1.87
Limch1Q3UH68 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC26.74■■□□□ 1.87
Limch1Q3UH68 Gm4419-202ENSMUST00000226239 1431 ntBASIC26.73■■□□□ 1.87
Limch1Q3UH68 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC26.72■■□□□ 1.87
Limch1Q3UH68 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
Limch1Q3UH68 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
Limch1Q3UH68 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC26.72■■□□□ 1.87
Limch1Q3UH68 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC26.71■■□□□ 1.87
Limch1Q3UH68 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC26.71■■□□□ 1.87
Limch1Q3UH68 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
Limch1Q3UH68 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC26.71■■□□□ 1.87
Limch1Q3UH68 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC26.7■■□□□ 1.86
Retrieved 100 of 76,532 protein–RNA pairs in 10.9 ms