Protein–RNA interactions for Protein: Q08423

Tff1, Trefoil factor 1, mousemouse

Predictions only

Length 87 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tff1Q08423 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Tff1Q08423 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Tff1Q08423 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Tff1Q08423 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC18.9■□□□□ 0.62
Tff1Q08423 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Tff1Q08423 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Tff1Q08423 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Tff1Q08423 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Tff1Q08423 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Tff1Q08423 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
Tff1Q08423 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Tff1Q08423 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
Tff1Q08423 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Tff1Q08423 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Tff1Q08423 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Tff1Q08423 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC18.87■□□□□ 0.61
Tff1Q08423 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Tff1Q08423 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Tff1Q08423 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Tff1Q08423 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Tff1Q08423 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Tff1Q08423 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Tff1Q08423 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC18.86■□□□□ 0.61
Tff1Q08423 Efhd2-201ENSMUST00000036854 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Tff1Q08423 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Tff1Q08423 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Tff1Q08423 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Tff1Q08423 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Tff1Q08423 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC18.85■□□□□ 0.61
Tff1Q08423 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Tff1Q08423 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Tff1Q08423 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Tff1Q08423 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
Tff1Q08423 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Tff1Q08423 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Tff1Q08423 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Tff1Q08423 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Tff1Q08423 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC18.83■□□□□ 0.6
Tff1Q08423 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Tff1Q08423 Il17rd-202ENSMUST00000223942 2186 ntBASIC18.82■□□□□ 0.6
Tff1Q08423 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Tff1Q08423 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Tff1Q08423 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Tff1Q08423 H3f3aos-201ENSMUST00000097448 2905 ntBASIC18.81■□□□□ 0.6
Tff1Q08423 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Tff1Q08423 Psip1-203ENSMUST00000107215 1898 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Tff1Q08423 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC18.81■□□□□ 0.6
Tff1Q08423 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Tff1Q08423 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Tff1Q08423 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Tff1Q08423 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC18.8■□□□□ 0.6
Tff1Q08423 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Tff1Q08423 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Tff1Q08423 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Tff1Q08423 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Tff1Q08423 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Tff1Q08423 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Tff1Q08423 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Tff1Q08423 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Tff1Q08423 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Tff1Q08423 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Tff1Q08423 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC18.77■□□□□ 0.6
Tff1Q08423 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Tff1Q08423 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Tff1Q08423 Gm11599-201ENSMUST00000118720 878 ntBASIC18.77■□□□□ 0.6
Tff1Q08423 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Tff1Q08423 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Tff1Q08423 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Tff1Q08423 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC18.77■□□□□ 0.59
Tff1Q08423 Particl-201ENSMUST00000205370 1560 ntBASIC18.76■□□□□ 0.59
Tff1Q08423 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Tff1Q08423 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
Tff1Q08423 Pdcd4-203ENSMUST00000165617 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Tff1Q08423 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Tff1Q08423 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Tff1Q08423 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Tff1Q08423 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Tff1Q08423 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Tff1Q08423 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Tff1Q08423 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC18.74■□□□□ 0.59
Tff1Q08423 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC18.74■□□□□ 0.59
Tff1Q08423 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Tff1Q08423 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Tff1Q08423 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Tff1Q08423 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Tff1Q08423 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC18.74■□□□□ 0.59
Tff1Q08423 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Tff1Q08423 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Tff1Q08423 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Tff1Q08423 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Tff1Q08423 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Tff1Q08423 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC18.73■□□□□ 0.59
Tff1Q08423 Fam92a-202ENSMUST00000108285 1639 ntAPPRIS P3 TSL 5 BASIC18.73■□□□□ 0.59
Tff1Q08423 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Tff1Q08423 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Tff1Q08423 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC18.72■□□□□ 0.59
Tff1Q08423 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Tff1Q08423 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Tff1Q08423 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Tff1Q08423 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC18.71■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 96 ms