Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cdh11P55288 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC20.74■□□□□ 0.91
Cdh11P55288 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cdh11P55288 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cdh11P55288 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cdh11P55288 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Cdh11P55288 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Cdh11P55288 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cdh11P55288 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Cdh11P55288 Gm7432-201ENSMUST00000210343 879 ntBASIC20.73■□□□□ 0.91
Cdh11P55288 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Cdh11P55288 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
Cdh11P55288 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Cdh11P55288 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC20.72■□□□□ 0.91
Cdh11P55288 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC20.72■□□□□ 0.91
Cdh11P55288 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC20.72■□□□□ 0.91
Cdh11P55288 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Cdh11P55288 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Cdh11P55288 Hoxc8-201ENSMUST00000001703 1868 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Cdh11P55288 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Cdh11P55288 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Cdh11P55288 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
Cdh11P55288 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.91
Cdh11P55288 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cdh11P55288 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC20.7■□□□□ 0.9
Cdh11P55288 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Cdh11P55288 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Cdh11P55288 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cdh11P55288 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Cdh11P55288 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cdh11P55288 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Cdh11P55288 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cdh11P55288 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Cdh11P55288 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC20.69■□□□□ 0.9
Cdh11P55288 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cdh11P55288 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cdh11P55288 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Cdh11P55288 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Cdh11P55288 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC20.68■□□□□ 0.9
Cdh11P55288 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Cdh11P55288 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cdh11P55288 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Cdh11P55288 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cdh11P55288 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Cdh11P55288 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC20.66■□□□□ 0.9
Cdh11P55288 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC20.66■□□□□ 0.9
Cdh11P55288 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Cdh11P55288 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cdh11P55288 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Cdh11P55288 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
Cdh11P55288 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cdh11P55288 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Cdh11P55288 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Cdh11P55288 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cdh11P55288 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cdh11P55288 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC20.63■□□□□ 0.89
Cdh11P55288 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Cdh11P55288 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cdh11P55288 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cdh11P55288 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cdh11P55288 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Cdh11P55288 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Cdh11P55288 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
Cdh11P55288 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Cdh11P55288 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cdh11P55288 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cdh11P55288 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC20.61■□□□□ 0.89
Cdh11P55288 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Cdh11P55288 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC20.61■□□□□ 0.89
Cdh11P55288 Gm11599-201ENSMUST00000118720 878 ntBASIC20.61■□□□□ 0.89
Cdh11P55288 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC20.61■□□□□ 0.89
Cdh11P55288 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Cdh11P55288 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Cdh11P55288 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
Cdh11P55288 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
Cdh11P55288 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cdh11P55288 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Cdh11P55288 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cdh11P55288 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cdh11P55288 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
Cdh11P55288 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC20.59■□□□□ 0.89
Cdh11P55288 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cdh11P55288 Gm17641-201ENSMUST00000166328 2350 ntBASIC20.58■□□□□ 0.89
Cdh11P55288 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cdh11P55288 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.89
Cdh11P55288 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC20.58■□□□□ 0.89
Cdh11P55288 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC20.58■□□□□ 0.88
Cdh11P55288 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Cdh11P55288 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC20.57■□□□□ 0.88
Cdh11P55288 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Cdh11P55288 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cdh11P55288 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cdh11P55288 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC20.56■□□□□ 0.88
Cdh11P55288 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC20.56■□□□□ 0.88
Cdh11P55288 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Cdh11P55288 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Cdh11P55288 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Cdh11P55288 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Cdh11P55288 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Cdh11P55288 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC20.54■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 63.5 ms