Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trbv1A0A0B4J1G7 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Trbv1A0A0B4J1G7 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trbv1A0A0B4J1G7 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trbv1A0A0B4J1G7 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trbv1A0A0B4J1G7 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
Trbv1A0A0B4J1G7 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC17.9■□□□□ 0.46
Trbv1A0A0B4J1G7 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trbv1A0A0B4J1G7 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trbv1A0A0B4J1G7 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
Trbv1A0A0B4J1G7 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trbv1A0A0B4J1G7 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.45
Trbv1A0A0B4J1G7 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trbv1A0A0B4J1G7 Kcnq5-201ENSMUST00000029667 6562 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trbv1A0A0B4J1G7 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trbv1A0A0B4J1G7 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC17.89■□□□□ 0.45
Trbv1A0A0B4J1G7 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trbv1A0A0B4J1G7 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
Trbv1A0A0B4J1G7 Barhl1-202ENSMUST00000113847 2160 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trbv1A0A0B4J1G7 Larp4b-204ENSMUST00000188939 2658 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Trbv1A0A0B4J1G7 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trbv1A0A0B4J1G7 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trbv1A0A0B4J1G7 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trbv1A0A0B4J1G7 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trbv1A0A0B4J1G7 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Trbv1A0A0B4J1G7 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trbv1A0A0B4J1G7 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
Trbv1A0A0B4J1G7 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC17.87■□□□□ 0.45
Trbv1A0A0B4J1G7 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trbv1A0A0B4J1G7 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trbv1A0A0B4J1G7 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Trbv1A0A0B4J1G7 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trbv1A0A0B4J1G7 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trbv1A0A0B4J1G7 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trbv1A0A0B4J1G7 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trbv1A0A0B4J1G7 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Trbv1A0A0B4J1G7 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC17.86■□□□□ 0.45
Trbv1A0A0B4J1G7 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Trbv1A0A0B4J1G7 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC17.85■□□□□ 0.45
Trbv1A0A0B4J1G7 Slc16a8-201ENSMUST00000039752 1806 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trbv1A0A0B4J1G7 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trbv1A0A0B4J1G7 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trbv1A0A0B4J1G7 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Trbv1A0A0B4J1G7 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trbv1A0A0B4J1G7 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trbv1A0A0B4J1G7 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trbv1A0A0B4J1G7 Dlx2-201ENSMUST00000024159 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trbv1A0A0B4J1G7 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trbv1A0A0B4J1G7 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trbv1A0A0B4J1G7 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trbv1A0A0B4J1G7 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trbv1A0A0B4J1G7 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC17.82■□□□□ 0.44
Trbv1A0A0B4J1G7 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Trbv1A0A0B4J1G7 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Trbv1A0A0B4J1G7 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trbv1A0A0B4J1G7 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Trbv1A0A0B4J1G7 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trbv1A0A0B4J1G7 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Trbv1A0A0B4J1G7 Arglu1-201ENSMUST00000048545 3197 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
Trbv1A0A0B4J1G7 H3f3aos-201ENSMUST00000097448 2905 ntBASIC17.82■□□□□ 0.44
Trbv1A0A0B4J1G7 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trbv1A0A0B4J1G7 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trbv1A0A0B4J1G7 Nrarp-201ENSMUST00000104999 2582 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Trbv1A0A0B4J1G7 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC17.81■□□□□ 0.44
Trbv1A0A0B4J1G7 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trbv1A0A0B4J1G7 Gm6277-202ENSMUST00000224036 2779 ntBASIC17.8■□□□□ 0.44
Trbv1A0A0B4J1G7 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trbv1A0A0B4J1G7 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trbv1A0A0B4J1G7 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Trbv1A0A0B4J1G7 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trbv1A0A0B4J1G7 Insm2-201ENSMUST00000051857 2660 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Trbv1A0A0B4J1G7 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trbv1A0A0B4J1G7 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Trbv1A0A0B4J1G7 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC17.79■□□□□ 0.44
Trbv1A0A0B4J1G7 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trbv1A0A0B4J1G7 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trbv1A0A0B4J1G7 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trbv1A0A0B4J1G7 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC17.79■□□□□ 0.44
Trbv1A0A0B4J1G7 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Trbv1A0A0B4J1G7 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trbv1A0A0B4J1G7 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC17.78■□□□□ 0.44
Trbv1A0A0B4J1G7 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
Trbv1A0A0B4J1G7 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC17.78■□□□□ 0.44
Trbv1A0A0B4J1G7 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trbv1A0A0B4J1G7 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trbv1A0A0B4J1G7 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trbv1A0A0B4J1G7 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Trbv1A0A0B4J1G7 Gm13042-201ENSMUST00000119244 1955 ntBASIC17.77■□□□□ 0.43
Trbv1A0A0B4J1G7 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC17.77■□□□□ 0.43
Trbv1A0A0B4J1G7 Fbxl14-201ENSMUST00000032094 2963 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Trbv1A0A0B4J1G7 B3gat1-203ENSMUST00000159799 2021 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Trbv1A0A0B4J1G7 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Trbv1A0A0B4J1G7 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trbv1A0A0B4J1G7 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trbv1A0A0B4J1G7 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Trbv1A0A0B4J1G7 Mlycd-201ENSMUST00000098367 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trbv1A0A0B4J1G7 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC17.75■□□□□ 0.43
Trbv1A0A0B4J1G7 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Trbv1A0A0B4J1G7 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC17.75■□□□□ 0.43
Trbv1A0A0B4J1G7 Emc10-202ENSMUST00000118808 1872 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 11 ms