RNA–Protein interactions for RNA: ENST00000469080.5

USP11-206, Transcript of ubiquitin specific peptidase 11, humanhuman

TSL 1 (best)

Gene USP11, Length 3,467 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP11-206ENST00000469080 TMEM248Q9NWD8 314 aa12.1□□□□□ -0.47
USP11-206ENST00000469080 KLF15Q9UIH9 416 aa12.1□□□□□ -0.47
USP11-206ENST00000469080 PNMA8BQ9ULN7 279 aaPredicted RBP12.1□□□□□ -0.47
USP11-206ENST00000469080 RNF103-CHMP3A0A140T963 221 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 PDZK1P1A8MUH7 402 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 RPP40O75818 363 aaKnown RBP12.09□□□□□ -0.47
USP11-206ENST00000469080 CLIC3O95833 236 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 GSNP06396 782 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 UQCRC1P31930 480 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 PTPN5P54829 565 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 DIO3P55073 304 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 CASP9P55211 416 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 FAM91A1Q658Y4 838 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 KDELC1Q6UW63 502 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 PLEKHM3Q6ZWE6 761 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 GPSM1Q86YR5 675 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 GRPEL2Q8TAA5 225 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 ZFP90Q8TF47 636 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 CYGBQ8WWM9 190 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 TCEAL4Q96EI5 215 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 TXNDC15Q96J42 360 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 MAGED4Q96JG8 741 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 MCCC2Q9HCC0 563 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 HCN4Q9Y3Q4 1203 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 WNT6Q9Y6F9 365 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 A0A1B0GVM2 712 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 TCAF2A6NFQ2 919 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 TRIM64A6NGJ6 449 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 TRIM64BA6NI03 449 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 HOXA2O43364 376 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 SLC25A14O95258 325 aaPredicted RBP12.09□□□□□ -0.47
USP11-206ENST00000469080 S1PR4O95977 384 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 CYBBP04839 570 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 DCKP27707 260 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 ARCN1P48444 511 aaKnown RBP12.09□□□□□ -0.47
USP11-206ENST00000469080 CLCN5P51795 746 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 GRB7Q14451 532 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 PARP15Q460N3 678 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 KIAA0930Q6ICG6 404 aaPredicted RBP12.09□□□□□ -0.47
USP11-206ENST00000469080 ZBTB49Q6ZSB9 765 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 LURAP1LQ8IV03 231 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 HID1Q8IV36 788 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 ANKRD53Q8N9V6 530 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 ARRDC2Q8TBH0 407 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 GANCQ8TET4 914 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 C17orf62Q9BQA9 187 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 HECAQ9UBI9 543 aaPredicted RBP12.09□□□□□ -0.47
USP11-206ENST00000469080 RIMKLBQ9ULI2 386 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 TESMINQ9Y4I5 508 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 SPEGQ15772 3267 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 A0A1B0GTL3 188 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 PLK4O00444 970 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 SYNCRIPO60506 623 aaKnown RBP12.09□□□□□ -0.47
USP11-206ENST00000469080 PRAMEF11O60813 436 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 RPL34P49207 117 aaKnown RBP12.09□□□□□ -0.47
USP11-206ENST00000469080 GPR85P60893 370 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 TXNL4AP83876 142 aaKnown RBP12.09□□□□□ -0.47
USP11-206ENST00000469080 HERC3Q15034 1050 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 UMODL1-AS1Q8N2C9 162 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 OR2T3Q8NH03 318 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 SCAMP4Q969E2 229 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 NCLNQ969V3 563 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 TP53INP1Q96A56 240 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 C3orf30Q96M34 536 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 TCF25Q9BQ70 676 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 NTN4Q9HB63 628 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 SPG21Q9NZD8 308 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 CCL26Q9Y258 94 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 MRPS7Q9Y2R9 242 aaKnown RBP12.09□□□□□ -0.47
USP11-206ENST00000469080 PCDHGA7Q9Y5G6 932 aa12.09□□□□□ -0.47
USP11-206ENST00000469080 BPTFQ12830 3046 aa12.08□□□□□ -0.47
USP11-206ENST00000469080 ANKRD66B4E2M5 251 aa12.08□□□□□ -0.48
USP11-206ENST00000469080 LDB2O43679 373 aa12.08□□□□□ -0.48
USP11-206ENST00000469080 CLDN11O75508 207 aa12.08□□□□□ -0.48
USP11-206ENST00000469080 FGF1P05230 155 aa12.08□□□□□ -0.48
USP11-206ENST00000469080 APOA4P06727 396 aa12.08□□□□□ -0.48
USP11-206ENST00000469080 SLC2A4P14672 509 aa12.08□□□□□ -0.48
USP11-206ENST00000469080 MATN1P21941 496 aa12.08□□□□□ -0.48
USP11-206ENST00000469080 HMGCS1Q01581 520 aa12.08□□□□□ -0.48
USP11-206ENST00000469080 C19orf57Q0VDD7 668 aa12.08□□□□□ -0.48
USP11-206ENST00000469080 CDK10Q15131 360 aa12.08□□□□□ -0.48
USP11-206ENST00000469080 ZMYND11Q15326 602 aa12.08□□□□□ -0.48
USP11-206ENST00000469080 SHEQ5VZ18 495 aa12.08□□□□□ -0.48
USP11-206ENST00000469080 ANKS6Q68DC2 871 aa12.08□□□□□ -0.48
USP11-206ENST00000469080 TIFABQ6ZNK6 161 aa12.08□□□□□ -0.48
USP11-206ENST00000469080 C2CD4AQ8NCU7 369 aaPredicted RBP12.08□□□□□ -0.48
USP11-206ENST00000469080 STYXQ8WUJ0 223 aa12.08□□□□□ -0.48
USP11-206ENST00000469080 SLC39A13Q96H72 371 aa12.08□□□□□ -0.48
USP11-206ENST00000469080 LRCH3Q96II8 777 aa12.08□□□□□ -0.48
USP11-206ENST00000469080 TSGA13Q96PP4 275 aa12.08□□□□□ -0.48
USP11-206ENST00000469080 WRAP53Q9BUR4 548 aaKnown RBP12.08□□□□□ -0.48
USP11-206ENST00000469080 TMEM106CQ9BVX2 250 aa12.08□□□□□ -0.48
USP11-206ENST00000469080 DNMT3BQ9UBC3 853 aaKnown RBP12.08□□□□□ -0.48
USP11-206ENST00000469080 CPNE7Q9UBL6 633 aa12.08□□□□□ -0.48
USP11-206ENST00000469080 MAFFQ9ULX9 164 aa12.08□□□□□ -0.48
USP11-206ENST00000469080 RGSL1A5PLK6 1076 aa12.08□□□□□ -0.48
USP11-206ENST00000469080 RNASEH2AO75792 299 aaKnown RBP12.08□□□□□ -0.48
USP11-206ENST00000469080 PAHP00439 452 aa12.08□□□□□ -0.48
USP11-206ENST00000469080 GNAO1P09471 354 aa12.08□□□□□ -0.48
USP11-206ENST00000469080 CKMT2P17540 419 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms