RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 USP7Q93009 1102 aa16.81■□□□□ 0.28
SHKBP1-212ENST00000596163 CERS2Q96G23 380 aa16.81■□□□□ 0.28
SHKBP1-212ENST00000596163 PWWP2AQ96N64 755 aa16.81■□□□□ 0.28
SHKBP1-212ENST00000596163 FBXO6Q9NRD1 293 aaPredicted RBP16.81■□□□□ 0.28
SHKBP1-212ENST00000596163 SLC39A1Q9NY26 324 aa16.81■□□□□ 0.28
SHKBP1-212ENST00000596163 KLHL42Q9P2K6 505 aa16.81■□□□□ 0.28
SHKBP1-212ENST00000596163 CDYLQ9Y232 598 aa16.81■□□□□ 0.28
SHKBP1-212ENST00000596163 BPTFQ12830 3046 aa16.81■□□□□ 0.28
SHKBP1-212ENST00000596163 AKAP13Q12802 2813 aa16.81■□□□□ 0.28
SHKBP1-212ENST00000596163 SPEGQ15772 3267 aa16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 PMS2P1A4D2B8 440 aa16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 CTAGE15A4D2H0 777 aa16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 TLX3O43711 291 aaPredicted RBP16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 NIPSNAP2O75323 286 aa16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 CTAGE8P0CG41 777 aa16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 ERVK-10P10266 1014 aa16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 FGF3P11487 239 aaPredicted RBP16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 CCL4P13236 92 aa16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 ITIH1P19827 911 aa16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 ATP5DP30049 168 aa16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 SLC5A2P31639 672 aa16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 SHMT2P34897 504 aa16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 EIF2S3P41091 472 aaKnown RBP16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 CARSP49589 748 aaKnown RBP16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 ARL4DP49703 201 aa16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 MC2RQ01718 297 aa16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 ABRQ12979 859 aa16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 HP1BP3Q5SSJ5 553 aaPredicted RBP16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 DCAF12Q5T6F0 453 aa16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 STEAP4Q687X5 459 aa16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 UGT3A1Q6NUS8 523 aa16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 FAM92BQ6ZTR7 304 aa16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 CTAGE6Q86UF2 777 aa16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 KMT5CQ86Y97 462 aa16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 CTAGE4Q8IX94 777 aa16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 ZBTB2Q8N680 514 aa16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 C2CD4AQ8NCU7 369 aaPredicted RBP16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 FBXO36Q8NEA4 188 aa16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 OR5AR1Q8NGP9 310 aa16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 MAGEC3Q8TD91 643 aa16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 TEFMQ96QE5 360 aaKnown RBP16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 ZPBPQ9BS86 351 aa16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 HGH1Q9BTY7 390 aa16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 DDA1Q9BW61 102 aa16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 ZNF768Q9H5H4 540 aaKnown RBP16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 FBXO8Q9NRD0 319 aa16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 TDRKHQ9Y2W6 561 aaKnown RBP16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 PCDHB11Q9Y5F2 797 aa16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 PCDHGA3Q9Y5H0 932 aa16.8■□□□□ 0.28
SHKBP1-212ENST00000596163 A0A087WV48 116 aa16.79■□□□□ 0.28
SHKBP1-212ENST00000596163 TLCD2A6NGC4 264 aa16.79■□□□□ 0.28
SHKBP1-212ENST00000596163 TP73O15350 636 aa16.79■□□□□ 0.28
SHKBP1-212ENST00000596163 MAP3K7O43318 606 aa16.79■□□□□ 0.28
SHKBP1-212ENST00000596163 HAUS5O94927 633 aa16.79■□□□□ 0.28
SHKBP1-212ENST00000596163 POLR2CP19387 275 aaPredicted RBP16.79■□□□□ 0.28
SHKBP1-212ENST00000596163 ETV5P41161 510 aa16.79■□□□□ 0.28
SHKBP1-212ENST00000596163 SEPHS1P49903 392 aa16.79■□□□□ 0.28
SHKBP1-212ENST00000596163 PLTPP55058 493 aa16.79■□□□□ 0.28
SHKBP1-212ENST00000596163 ZNF789Q5FWF6 425 aa16.79■□□□□ 0.28
SHKBP1-212ENST00000596163 CEACAM20Q6UY09 585 aa16.79■□□□□ 0.28
SHKBP1-212ENST00000596163 GALNT7Q86SF2 657 aa16.79■□□□□ 0.28
SHKBP1-212ENST00000596163 ANKMY2Q8IV38 441 aa16.79■□□□□ 0.28
SHKBP1-212ENST00000596163 VRK3Q8IV63 474 aa16.79■□□□□ 0.28
SHKBP1-212ENST00000596163 DCUN1D3Q8IWE4 304 aa16.79■□□□□ 0.28
SHKBP1-212ENST00000596163 CNTN4Q8IWV2 1026 aa16.79■□□□□ 0.28
SHKBP1-212ENST00000596163 PALM2Q8IXS6 379 aa16.79■□□□□ 0.28
SHKBP1-212ENST00000596163 ZBED8Q8IZ13 594 aa16.79■□□□□ 0.28
SHKBP1-212ENST00000596163 UNC5BQ8IZJ1 945 aa16.79■□□□□ 0.28
SHKBP1-212ENST00000596163 RAB42Q8N4Z0 105 aa16.79■□□□□ 0.28
SHKBP1-212ENST00000596163 CFAP61Q8NHU2 1237 aa16.79■□□□□ 0.28
SHKBP1-212ENST00000596163 PYROXD1Q8WU10 500 aa16.79■□□□□ 0.28
SHKBP1-212ENST00000596163 KLHL6Q8WZ60 621 aa16.79■□□□□ 0.28
SHKBP1-212ENST00000596163 KCNJ9Q92806 393 aa16.79■□□□□ 0.28
SHKBP1-212ENST00000596163 ART4Q93070 314 aa16.79■□□□□ 0.28
SHKBP1-212ENST00000596163 DCBLD2Q96PD2 775 aa16.79■□□□□ 0.28
SHKBP1-212ENST00000596163 DPH1Q9BZG8 443 aa16.79■□□□□ 0.28
SHKBP1-212ENST00000596163 PHACTR1Q9C0D0 580 aa16.79■□□□□ 0.28
SHKBP1-212ENST00000596163 OCIAD1Q9NX40 245 aa16.79■□□□□ 0.28
SHKBP1-212ENST00000596163 OR6C2Q9NZP2 312 aa16.79■□□□□ 0.28
SHKBP1-212ENST00000596163 SEMA5BQ9P283 1151 aa16.79■□□□□ 0.28
SHKBP1-212ENST00000596163 ACSL6Q9UKU0 697 aa16.79■□□□□ 0.28
SHKBP1-212ENST00000596163 COL27A1Q8IZC6 1860 aaPredicted RBP16.79■□□□□ 0.28
SHKBP1-212ENST00000596163 GSAPA4D1B5 854 aa16.78■□□□□ 0.28
SHKBP1-212ENST00000596163 C2orf74A8MZ97 194 aa16.78■□□□□ 0.28
SHKBP1-212ENST00000596163 VPS26AO75436 327 aa16.78■□□□□ 0.28
SHKBP1-212ENST00000596163 CCNFP41002 786 aa16.78■□□□□ 0.28
SHKBP1-212ENST00000596163 SKIV2L2P42285 1042 aaKnown RBP16.78■□□□□ 0.28
SHKBP1-212ENST00000596163 MPP1Q00013 466 aa16.78■□□□□ 0.28
SHKBP1-212ENST00000596163 ILF2Q12905 390 aaKnown RBP16.78■□□□□ 0.28
SHKBP1-212ENST00000596163 MMGT1Q8N4V1 131 aa16.78■□□□□ 0.28
SHKBP1-212ENST00000596163 CEP112Q8N8E3 955 aa16.78■□□□□ 0.28
SHKBP1-212ENST00000596163 KCNE4Q8WWG9 221 aa16.78■□□□□ 0.28
SHKBP1-212ENST00000596163 INPP5DQ92835 1189 aa16.78■□□□□ 0.28
SHKBP1-212ENST00000596163 LRRC1Q9BTT6 524 aa16.78■□□□□ 0.28
SHKBP1-212ENST00000596163 SAYSD1Q9NPB0 183 aa16.78■□□□□ 0.28
SHKBP1-212ENST00000596163 GRHL1Q9NZI5 618 aa16.78■□□□□ 0.28
SHKBP1-212ENST00000596163 POLR1CO15160 346 aaPredicted RBP16.77■□□□□ 0.28
SHKBP1-212ENST00000596163 KIF1CO43896 1103 aaKnown RBP16.77■□□□□ 0.28
SHKBP1-212ENST00000596163 PRAMEF10O60809 474 aa16.77■□□□□ 0.28
SHKBP1-212ENST00000596163 CBSLP0DN79 551 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms