RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 VIMP08670 466 aaKnown RBP18.36■□□□□ 0.53
CLN3-206ENST00000360019 OR56A5P0C7T3 313 aa18.36■□□□□ 0.53
CLN3-206ENST00000360019 TMEM31Q5JXX7 168 aa18.36■□□□□ 0.53
CLN3-206ENST00000360019 KLC3Q6P597 504 aa18.36■□□□□ 0.53
CLN3-206ENST00000360019 TRIM74Q86UV6 250 aa18.36■□□□□ 0.53
CLN3-206ENST00000360019 HORMAD1Q86X24 394 aa18.36■□□□□ 0.53
CLN3-206ENST00000360019 NKAPQ8N5F7 415 aaKnown RBP18.36■□□□□ 0.53
CLN3-206ENST00000360019 EEF1AKMT1Q8WVE0 214 aa18.36■□□□□ 0.53
CLN3-206ENST00000360019 KLK6Q92876 244 aa18.36■□□□□ 0.53
CLN3-206ENST00000360019 DERL2Q9GZP9 239 aa18.36■□□□□ 0.53
CLN3-206ENST00000360019 ALG9Q9H6U8 611 aa18.36■□□□□ 0.53
CLN3-206ENST00000360019 SLCO1B3Q9NPD5 702 aa18.36■□□□□ 0.53
CLN3-206ENST00000360019 KCTD5Q9NXV2 234 aa18.36■□□□□ 0.53
CLN3-206ENST00000360019 ZKSCAN7Q9P0L1 754 aaPredicted RBP18.36■□□□□ 0.53
CLN3-206ENST00000360019 EBF1Q9UH73 591 aa18.36■□□□□ 0.53
CLN3-206ENST00000360019 TBC1D3DA0A087WVF3 549 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 TBC1D3IA0A087WXS9 549 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 TBC1D3EA0A087X179 549 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 TBC1D3KA0A087X1G2 549 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 TBC1D3FA6NER0 549 aaPredicted RBP18.35■□□□□ 0.53
CLN3-206ENST00000360019 TBC1D3LB9A6J9 549 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 PCCBP05166 539 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 TBC1D3HP0C7X1 549 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 RALBP11234 206 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 ACSL1P33121 698 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 KCNC1P48547 511 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 PPP2CBP62714 309 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 PPP2CAP67775 309 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 TMEM115Q12893 351 aaPredicted RBP18.35■□□□□ 0.53
CLN3-206ENST00000360019 CHI3L2Q15782 390 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 TBC1D3GQ6DHY5 549 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 TBC1D3CQ6IPX1 549 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 PNCKQ6P2M8 343 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 ZYG11AQ6WRX3 759 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 NAPRTQ6XQN6 538 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 UBALD2Q8IYN6 164 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 TBC1D3Q8IZP1 549 aaPredicted RBP18.35■□□□□ 0.53
CLN3-206ENST00000360019 RASGEF1AQ8N9B8 481 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 RDH11Q8TC12 318 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 INPP5DQ92835 1189 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 LINGO1Q96FE5 620 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 LENG8Q96PV6 779 aaPredicted RBP18.35■□□□□ 0.53
CLN3-206ENST00000360019 PANX3Q96QZ0 392 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 FAM107BQ9H098 131 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 MBNL1Q9NR56 388 aaKnown RBP18.35■□□□□ 0.53
CLN3-206ENST00000360019 LATS2Q9NRM7 1088 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 SPATS2LQ9NUQ6 558 aaKnown RBP18.35■□□□□ 0.53
CLN3-206ENST00000360019 AP2A2O94973 939 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 FGF3P11487 239 aaPredicted RBP18.35■□□□□ 0.53
CLN3-206ENST00000360019 NEFHP12036 1026 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 DRD4P21917 467 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 CCR7P32248 378 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 CTSCP53634 463 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 IL2P60568 153 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 SFSWAPQ12872 951 aaKnown RBP18.35■□□□□ 0.53
CLN3-206ENST00000360019 OR4D1Q15615 310 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 ADAMTSL4Q6UY14 1074 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 ZCCHC23Q6ZST2 131 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 ZBTB2Q8N680 514 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 BEND7Q8N7W2 519 aaPredicted RBP18.35■□□□□ 0.53
CLN3-206ENST00000360019 TP53I13Q8NBR0 393 aaPredicted RBP18.35■□□□□ 0.53
CLN3-206ENST00000360019 FUBP1Q96AE4 644 aaKnown RBP18.35■□□□□ 0.53
CLN3-206ENST00000360019 NELL2Q99435 816 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 TBC1D17Q9HA65 648 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 ITM2CQ9NQX7 267 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 FGFR1OP2Q9NVK5 253 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 USP36Q9P275 1121 aaKnown RBP18.35■□□□□ 0.53
CLN3-206ENST00000360019 MUTYHQ9UIF7 546 aa18.35■□□□□ 0.53
CLN3-206ENST00000360019 OR2AG2A6NM03 316 aa18.34■□□□□ 0.53
CLN3-206ENST00000360019 KLF11O14901 512 aa18.34■□□□□ 0.53
CLN3-206ENST00000360019 RBP1P09455 135 aa18.34■□□□□ 0.53
CLN3-206ENST00000360019 MYL2P10916 166 aa18.34■□□□□ 0.53
CLN3-206ENST00000360019 IRF4Q15306 451 aa18.34■□□□□ 0.53
CLN3-206ENST00000360019 MAP7D1Q3KQU3 841 aa18.34■□□□□ 0.53
CLN3-206ENST00000360019 ANO7Q6IWH7 933 aa18.34■□□□□ 0.53
CLN3-206ENST00000360019 NEK5Q6P3R8 708 aa18.34■□□□□ 0.53
CLN3-206ENST00000360019 FAM47EQ6ZV65 393 aa18.34■□□□□ 0.53
CLN3-206ENST00000360019 OTOAQ7RTW8 1153 aa18.34■□□□□ 0.53
CLN3-206ENST00000360019 HEATR4Q86WZ0 1026 aa18.34■□□□□ 0.53
CLN3-206ENST00000360019 COX14Q96I36 57 aa18.34■□□□□ 0.53
CLN3-206ENST00000360019 CCT8L2Q96SF2 557 aa18.34■□□□□ 0.53
CLN3-206ENST00000360019 SLC17A9Q9BYT1 436 aa18.34■□□□□ 0.53
CLN3-206ENST00000360019 KDM4CQ9H3R0 1056 aa18.34■□□□□ 0.53
CLN3-206ENST00000360019 TFB2MQ9H5Q4 396 aaKnown RBP18.34■□□□□ 0.53
CLN3-206ENST00000360019 CD320Q9NPF0 282 aa18.34■□□□□ 0.53
CLN3-206ENST00000360019 MID2Q9UJV3 735 aa18.34■□□□□ 0.53
CLN3-206ENST00000360019 A0A0C4DFX4 3053 aa18.34■□□□□ 0.53
CLN3-206ENST00000360019 RAD51BO15315 384 aa18.33■□□□□ 0.53
CLN3-206ENST00000360019 ATG13O75143 517 aa18.33■□□□□ 0.53
CLN3-206ENST00000360019 MAT2AP31153 395 aaKnown RBP18.33■□□□□ 0.53
CLN3-206ENST00000360019 ATP6V0D1P61421 351 aa18.33■□□□□ 0.53
CLN3-206ENST00000360019 BST1Q10588 318 aa18.33■□□□□ 0.53
CLN3-206ENST00000360019 ACSBG2Q5FVE4 666 aa18.33■□□□□ 0.53
CLN3-206ENST00000360019 PIWIL4Q7Z3Z4 852 aaKnown RBP18.33■□□□□ 0.53
CLN3-206ENST00000360019 ADGRG6Q86SQ4 1221 aa18.33■□□□□ 0.53
CLN3-206ENST00000360019 OR6Y1Q8NGX8 325 aa18.33■□□□□ 0.53
CLN3-206ENST00000360019 RHEBL1Q8TAI7 183 aa18.33■□□□□ 0.53
CLN3-206ENST00000360019 BCAS4Q8TDM0 211 aa18.33■□□□□ 0.53
CLN3-206ENST00000360019 KIAA1191Q96A73 305 aa18.33■□□□□ 0.53
CLN3-206ENST00000360019 PDLIM5Q96HC4 596 aaKnown RBP18.33■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms