RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 PPP1R3BQ86XI6 285 aa16.72■□□□□ 0.27
VPS29-204ENST00000548259 LRRC49Q8IUZ0 686 aa16.72■□□□□ 0.27
VPS29-204ENST00000548259 PGBD5Q8N414 524 aa16.72■□□□□ 0.27
VPS29-204ENST00000548259 ZDHHC12Q96GR4 267 aa16.72■□□□□ 0.27
VPS29-204ENST00000548259 TGM7Q96PF1 710 aa16.72■□□□□ 0.27
VPS29-204ENST00000548259 SLC25A23Q9BV35 468 aa16.72■□□□□ 0.27
VPS29-204ENST00000548259 GPR87Q9BY21 358 aa16.72■□□□□ 0.27
VPS29-204ENST00000548259 POLR1EQ9GZS1 481 aaKnown RBP16.72■□□□□ 0.27
VPS29-204ENST00000548259 ZNF768Q9H5H4 540 aaKnown RBP16.72■□□□□ 0.27
VPS29-204ENST00000548259 PDE7BQ9NP56 450 aa16.72■□□□□ 0.27
VPS29-204ENST00000548259 EPHB6O15197 1021 aa16.71■□□□□ 0.27
VPS29-204ENST00000548259 GRID2O43424 1007 aa16.71■□□□□ 0.27
VPS29-204ENST00000548259 MAFKO60675 156 aa16.71■□□□□ 0.27
VPS29-204ENST00000548259 MTA2O94776 668 aa16.71■□□□□ 0.27
VPS29-204ENST00000548259 PEX11BO96011 259 aa16.71■□□□□ 0.27
VPS29-204ENST00000548259 FURINP09958 794 aa16.71■□□□□ 0.27
VPS29-204ENST00000548259 FGF5P12034 268 aa16.71■□□□□ 0.27
VPS29-204ENST00000548259 FERP16591 822 aa16.71■□□□□ 0.27
VPS29-204ENST00000548259 ZNF28P17035 718 aa16.71■□□□□ 0.27
VPS29-204ENST00000548259 TNFAIP3P21580 790 aa16.71■□□□□ 0.27
VPS29-204ENST00000548259 RFLNAQ6ZTI6 216 aa16.71■□□□□ 0.27
VPS29-204ENST00000548259 CCHCR1Q8TD31 782 aa16.71■□□□□ 0.27
VPS29-204ENST00000548259 ELMO2Q96JJ3 720 aa16.71■□□□□ 0.27
VPS29-204ENST00000548259 CARD9Q9H257 536 aa16.71■□□□□ 0.27
VPS29-204ENST00000548259 OSGEPL1Q9H4B0 414 aa16.71■□□□□ 0.27
VPS29-204ENST00000548259 NT5MQ9NPB1 228 aa16.71■□□□□ 0.27
VPS29-204ENST00000548259 ACSS2Q9NR19 701 aa16.71■□□□□ 0.27
VPS29-204ENST00000548259 PCDHGA9Q9Y5G4 932 aaKnown RBP16.71■□□□□ 0.27
VPS29-204ENST00000548259 NBPF19A0A087WUL8 3843 aa16.71■□□□□ 0.27
VPS29-204ENST00000548259 A1L4Q6 167 aa16.7■□□□□ 0.26
VPS29-204ENST00000548259 RGSL1A5PLK6 1076 aa16.7■□□□□ 0.26
VPS29-204ENST00000548259 GOLGA6L3A6NEY3 463 aa16.7■□□□□ 0.26
VPS29-204ENST00000548259 SPAG6O75602 509 aa16.7■□□□□ 0.26
VPS29-204ENST00000548259 TYRP1P17643 537 aa16.7■□□□□ 0.26
VPS29-204ENST00000548259 CLCNKAP51800 687 aa16.7■□□□□ 0.26
VPS29-204ENST00000548259 GFERP55789 205 aa16.7■□□□□ 0.26
VPS29-204ENST00000548259 RPS15P62841 145 aaKnown RBP16.7■□□□□ 0.26
VPS29-204ENST00000548259 PDE1BQ01064 536 aa16.7■□□□□ 0.26
VPS29-204ENST00000548259 PTPRRQ15256 657 aa16.7■□□□□ 0.26
VPS29-204ENST00000548259 KRT31Q15323 416 aa16.7■□□□□ 0.26
VPS29-204ENST00000548259 TMEM26Q6ZUK4 368 aa16.7■□□□□ 0.26
VPS29-204ENST00000548259 HPS6Q86YV9 775 aa16.7■□□□□ 0.26
VPS29-204ENST00000548259 RBM12BQ8IXT5 1001 aaKnown RBP16.7■□□□□ 0.26
VPS29-204ENST00000548259 AOPEPQ8N6M6 819 aa16.7■□□□□ 0.26
VPS29-204ENST00000548259 FCRL4Q96PJ5 515 aa16.7■□□□□ 0.26
VPS29-204ENST00000548259 PLEKHG4BQ96PX9 1271 aa16.7■□□□□ 0.26
VPS29-204ENST00000548259 PEBP4Q96S96 227 aa16.7■□□□□ 0.26
VPS29-204ENST00000548259 AGAP2Q99490 1192 aa16.7■□□□□ 0.26
VPS29-204ENST00000548259 CLSTN2Q9H4D0 955 aa16.7■□□□□ 0.26
VPS29-204ENST00000548259 FAM83DQ9H4H8 585 aa16.7■□□□□ 0.26
VPS29-204ENST00000548259 LHX9Q9NQ69 397 aa16.7■□□□□ 0.26
VPS29-204ENST00000548259 CASS4Q9NQ75 786 aa16.7■□□□□ 0.26
VPS29-204ENST00000548259 PKD2L2Q9NZM6 624 aa16.7■□□□□ 0.26
VPS29-204ENST00000548259 RCOR3Q9P2K3 495 aaPredicted RBP16.7■□□□□ 0.26
VPS29-204ENST00000548259 SIK3Q9Y2K2 1263 aa16.7■□□□□ 0.26
VPS29-204ENST00000548259 ZNF451Q9Y4E5 1061 aa16.7■□□□□ 0.26
VPS29-204ENST00000548259 MAP4K5Q9Y4K4 846 aa16.7■□□□□ 0.26
VPS29-204ENST00000548259 PCDHGB7Q9Y5F8 929 aa16.7■□□□□ 0.26
VPS29-204ENST00000548259 GPR89AB7ZAQ6 455 aa16.69■□□□□ 0.26
VPS29-204ENST00000548259 NUAK1O60285 661 aa16.69■□□□□ 0.26
VPS29-204ENST00000548259 PDHA1P08559 390 aa16.69■□□□□ 0.26
VPS29-204ENST00000548259 GPR89BP0CG08 455 aa16.69■□□□□ 0.26
VPS29-204ENST00000548259 XRCC1P18887 633 aaPredicted RBP16.69■□□□□ 0.26
VPS29-204ENST00000548259 RPL26P61254 145 aaKnown RBP16.69■□□□□ 0.26
VPS29-204ENST00000548259 UBE2IP63279 158 aaKnown RBP16.69■□□□□ 0.26
VPS29-204ENST00000548259 SH3BP2P78314 561 aa16.69■□□□□ 0.26
VPS29-204ENST00000548259 BOLA3Q53S33 107 aa16.69■□□□□ 0.26
VPS29-204ENST00000548259 ANKRD20A8PQ5CZ79 823 aa16.69■□□□□ 0.26
VPS29-204ENST00000548259 CACHD1Q5VU97 1274 aa16.69■□□□□ 0.26
VPS29-204ENST00000548259 PLEKHA7Q6IQ23 1121 aa16.69■□□□□ 0.26
VPS29-204ENST00000548259 MAMDC2Q7Z304 686 aaPredicted RBP16.69■□□□□ 0.26
VPS29-204ENST00000548259 PRSS42Q7Z5A4 293 aa16.69■□□□□ 0.26
VPS29-204ENST00000548259 TMEM135Q86UB9 458 aa16.69■□□□□ 0.26
VPS29-204ENST00000548259 BPHLQ86WA6 291 aaPredicted RBP16.69■□□□□ 0.26
VPS29-204ENST00000548259 TP53INP2Q8IXH6 220 aa16.69■□□□□ 0.26
VPS29-204ENST00000548259 ENOX1Q8TC92 643 aaKnown RBP16.69■□□□□ 0.26
VPS29-204ENST00000548259 CT55Q8WUE5 264 aa16.69■□□□□ 0.26
VPS29-204ENST00000548259 BRD8Q9H0E9 1235 aa16.69■□□□□ 0.26
VPS29-204ENST00000548259 ACTL8Q9H568 366 aa16.69■□□□□ 0.26
VPS29-204ENST00000548259 SLAMF7Q9NQ25 335 aa16.69■□□□□ 0.26
VPS29-204ENST00000548259 KLC4Q9NSK0 619 aa16.69■□□□□ 0.26
VPS29-204ENST00000548259 MAP10Q9P2G4 905 aa16.69■□□□□ 0.26
VPS29-204ENST00000548259 RARRES3Q9UL19 164 aa16.69■□□□□ 0.26
VPS29-204ENST00000548259 RPL26L1Q9UNX3 145 aaKnown RBP16.69■□□□□ 0.26
VPS29-204ENST00000548259 SCINQ9Y6U3 715 aa16.69■□□□□ 0.26
VPS29-204ENST00000548259 CENPEQ02224 2701 aa16.68■□□□□ 0.26
VPS29-204ENST00000548259 A0A0U1RQS6 177 aa16.68■□□□□ 0.26
VPS29-204ENST00000548259 TMEM191CA6NGB0 347 aa16.68■□□□□ 0.26
VPS29-204ENST00000548259 TMCO5BA8MYB1 307 aa16.68■□□□□ 0.26
VPS29-204ENST00000548259 FZD6O60353 706 aa16.68■□□□□ 0.26
VPS29-204ENST00000548259 DPM1O60762 260 aa16.68■□□□□ 0.26
VPS29-204ENST00000548259 SEMA7AO75326 666 aa16.68■□□□□ 0.26
VPS29-204ENST00000548259 DNAJB5O75953 348 aa16.68■□□□□ 0.26
VPS29-204ENST00000548259 PCK1P35558 622 aa16.68■□□□□ 0.26
VPS29-204ENST00000548259 CHRNA6Q15825 494 aa16.68■□□□□ 0.26
VPS29-204ENST00000548259 DPYSL2Q16555 572 aa16.68■□□□□ 0.26
VPS29-204ENST00000548259 UGT8Q16880 541 aa16.68■□□□□ 0.26
VPS29-204ENST00000548259 INSCQ1MX18 579 aa16.68■□□□□ 0.26
VPS29-204ENST00000548259 SYVN1Q86TM6 617 aa16.68■□□□□ 0.26
VPS29-204ENST00000548259 ARFGAP1Q8N6T3 406 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 110.9 ms