RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 OLFM3Q96PB7 478 aa18.97■□□□□ 0.63
CCDC28A-203ENST00000617445 OR2M4Q96R27 311 aa18.97■□□□□ 0.63
CCDC28A-203ENST00000617445 RIOK2Q9BVS4 552 aaKnown RBP18.97■□□□□ 0.63
CCDC28A-203ENST00000617445 PKD2L2Q9NZM6 624 aa18.97■□□□□ 0.63
CCDC28A-203ENST00000617445 VPS18Q9P253 973 aa18.97■□□□□ 0.63
CCDC28A-203ENST00000617445 SSUH2Q9Y2M2 353 aa18.97■□□□□ 0.63
CCDC28A-203ENST00000617445 LOC400499M0QZD8 3231 aa18.97■□□□□ 0.63
CCDC28A-203ENST00000617445 CASC3O15234 703 aaKnown RBP18.96■□□□□ 0.63
CCDC28A-203ENST00000617445 KLK10O43240 276 aa18.96■□□□□ 0.63
CCDC28A-203ENST00000617445 KRT1P04264 644 aa18.96■□□□□ 0.63
CCDC28A-203ENST00000617445 UGT1A5P35504 534 aa18.96■□□□□ 0.63
CCDC28A-203ENST00000617445 POLD2P49005 469 aa18.96■□□□□ 0.63
CCDC28A-203ENST00000617445 SPINT3P49223 89 aa18.96■□□□□ 0.63
CCDC28A-203ENST00000617445 B4GALNT1Q00973 533 aa18.96■□□□□ 0.63
CCDC28A-203ENST00000617445 BIRC2Q13490 618 aa18.96■□□□□ 0.63
CCDC28A-203ENST00000617445 TFDP2Q14188 446 aa18.96■□□□□ 0.63
CCDC28A-203ENST00000617445 PYCR3Q53H96 274 aa18.96■□□□□ 0.63
CCDC28A-203ENST00000617445 DOK6Q6PKX4 331 aa18.96■□□□□ 0.63
CCDC28A-203ENST00000617445 SLC30A9Q6PML9 568 aa18.96■□□□□ 0.63
CCDC28A-203ENST00000617445 RFLNAQ6ZTI6 216 aa18.96■□□□□ 0.63
CCDC28A-203ENST00000617445 NT5DC3Q86UY8 548 aa18.96■□□□□ 0.63
CCDC28A-203ENST00000617445 RFX6Q8HWS3 928 aa18.96■□□□□ 0.63
CCDC28A-203ENST00000617445 IMP4Q96G21 291 aaKnown RBP18.96■□□□□ 0.63
CCDC28A-203ENST00000617445 SMIM14Q96QK8 99 aa18.96■□□□□ 0.63
CCDC28A-203ENST00000617445 SRPK1Q96SB4 655 aaKnown RBP18.96■□□□□ 0.63
CCDC28A-203ENST00000617445 SLC25A51Q9H1U9 297 aa18.96■□□□□ 0.63
CCDC28A-203ENST00000617445 FAM83DQ9H4H8 585 aa18.96■□□□□ 0.63
CCDC28A-203ENST00000617445 SUDS3Q9H7L9 328 aaPredicted RBP18.96■□□□□ 0.63
CCDC28A-203ENST00000617445 RAD18Q9NS91 495 aa18.96■□□□□ 0.63
CCDC28A-203ENST00000617445 BAHCC1Q9P281 2608 aa18.95■□□□□ 0.62
CCDC28A-203ENST00000617445 A0A0U1RQS6 177 aa18.95■□□□□ 0.62
CCDC28A-203ENST00000617445 SPOPO43791 374 aa18.95■□□□□ 0.62
CCDC28A-203ENST00000617445 ECEL1O95672 775 aa18.95■□□□□ 0.62
CCDC28A-203ENST00000617445 CPNE6O95741 557 aa18.95■□□□□ 0.62
CCDC28A-203ENST00000617445 AK4P27144 223 aaPredicted RBP18.95■□□□□ 0.62
CCDC28A-203ENST00000617445 CXADRP78310 365 aa18.95■□□□□ 0.62
CCDC28A-203ENST00000617445 ZBTB17Q13105 803 aa18.95■□□□□ 0.62
CCDC28A-203ENST00000617445 PIM3Q86V86 326 aa18.95■□□□□ 0.62
CCDC28A-203ENST00000617445 GALNT13Q8IUC8 556 aa18.95■□□□□ 0.62
CCDC28A-203ENST00000617445 LRRN4Q8WUT4 740 aa18.95■□□□□ 0.62
CCDC28A-203ENST00000617445 RNF25Q96BH1 459 aaPredicted RBP18.95■□□□□ 0.62
CCDC28A-203ENST00000617445 CMKLR1Q99788 373 aa18.95■□□□□ 0.62
CCDC28A-203ENST00000617445 DPYSL5Q9BPU6 564 aa18.95■□□□□ 0.62
CCDC28A-203ENST00000617445 FOXP3Q9BZS1 431 aa18.95■□□□□ 0.62
CCDC28A-203ENST00000617445 TRIM5Q9C035 493 aa18.95■□□□□ 0.62
CCDC28A-203ENST00000617445 RMI1Q9H9A7 625 aa18.95■□□□□ 0.62
CCDC28A-203ENST00000617445 AKAP7Q9P0M2 348 aaPredicted RBP18.95■□□□□ 0.62
CCDC28A-203ENST00000617445 ACSL6Q9UKU0 697 aa18.95■□□□□ 0.62
CCDC28A-203ENST00000617445 TMEM98Q9Y2Y6 226 aa18.95■□□□□ 0.62
CCDC28A-203ENST00000617445 SCN8AQ9UQD0 1980 aa18.94■□□□□ 0.62
CCDC28A-203ENST00000617445 ATXN7O15265 892 aaPredicted RBP18.94■□□□□ 0.62
CCDC28A-203ENST00000617445 NVLO15381 856 aaKnown RBP18.94■□□□□ 0.62
CCDC28A-203ENST00000617445 B4GAT1O43505 415 aa18.94■□□□□ 0.62
CCDC28A-203ENST00000617445 PSTPIP1O43586 416 aa18.94■□□□□ 0.62
CCDC28A-203ENST00000617445 JMJD7P0C870 316 aa18.94■□□□□ 0.62
CCDC28A-203ENST00000617445 COMTP21964 271 aa18.94■□□□□ 0.62
CCDC28A-203ENST00000617445 ACTR1BP42025 376 aa18.94■□□□□ 0.62
CCDC28A-203ENST00000617445 MAGEA1P43355 309 aa18.94■□□□□ 0.62
CCDC28A-203ENST00000617445 ACTR1AP61163 376 aa18.94■□□□□ 0.62
CCDC28A-203ENST00000617445 SQSTM1Q13501 440 aa18.94■□□□□ 0.62
CCDC28A-203ENST00000617445 TEX44Q53QW1 395 aa18.94■□□□□ 0.62
CCDC28A-203ENST00000617445 HENMT1Q5T8I9 393 aaKnown RBP18.94■□□□□ 0.62
CCDC28A-203ENST00000617445 SLITRK4Q8IW52 837 aa18.94■□□□□ 0.62
CCDC28A-203ENST00000617445 SFTPA2Q8IWL1 248 aa18.94■□□□□ 0.62
CCDC28A-203ENST00000617445 CCDC170Q8IYT3 715 aa18.94■□□□□ 0.62
CCDC28A-203ENST00000617445 NAGSQ8N159 534 aa18.94■□□□□ 0.62
CCDC28A-203ENST00000617445 PTCD2Q8WV60 388 aaKnown RBP18.94■□□□□ 0.62
CCDC28A-203ENST00000617445 SNRNP27Q8WVK2 155 aaKnown RBP18.94■□□□□ 0.62
CCDC28A-203ENST00000617445 BBC3Q96PG8 261 aaPredicted RBP18.94■□□□□ 0.62
CCDC28A-203ENST00000617445 AGAP2Q99490 1192 aa18.94■□□□□ 0.62
CCDC28A-203ENST00000617445 B3GNT4Q9C0J1 378 aa18.94■□□□□ 0.62
CCDC28A-203ENST00000617445 ZFYVE1Q9HBF4 777 aa18.94■□□□□ 0.62
CCDC28A-203ENST00000617445 MAGEE1Q9HCI5 957 aa18.94■□□□□ 0.62
CCDC28A-203ENST00000617445 LUC7LQ9NQ29 371 aaKnown RBP18.94■□□□□ 0.62
CCDC28A-203ENST00000617445 ATXN7L1Q9ULK2 861 aaPredicted RBP18.94■□□□□ 0.62
CCDC28A-203ENST00000617445 MTSS1O43312 755 aa18.93■□□□□ 0.62
CCDC28A-203ENST00000617445 LCA5LO95447 670 aa18.93■□□□□ 0.62
CCDC28A-203ENST00000617445 ASMTLO95671 621 aa18.93■□□□□ 0.62
CCDC28A-203ENST00000617445 ALDH4A1P30038 563 aa18.93■□□□□ 0.62
CCDC28A-203ENST00000617445 NOP2P46087 812 aaKnown RBP18.93■□□□□ 0.62
CCDC28A-203ENST00000617445 MAZP56270 477 aaKnown RBP18.93■□□□□ 0.62
CCDC28A-203ENST00000617445 COL9A2Q14055 689 aaPredicted RBP18.93■□□□□ 0.62
CCDC28A-203ENST00000617445 TAZQ16635 292 aa18.93■□□□□ 0.62
CCDC28A-203ENST00000617445 MAP9Q49MG5 647 aa18.93■□□□□ 0.62
CCDC28A-203ENST00000617445 CCDC70Q6NSX1 233 aa18.93■□□□□ 0.62
CCDC28A-203ENST00000617445 MFSD7Q6UXD7 560 aa18.93■□□□□ 0.62
CCDC28A-203ENST00000617445 TADA1Q96BN2 335 aa18.93■□□□□ 0.62
CCDC28A-203ENST00000617445 AGAP3Q96P47 875 aa18.93■□□□□ 0.62
CCDC28A-203ENST00000617445 TRIB3Q96RU7 358 aa18.93■□□□□ 0.62
CCDC28A-203ENST00000617445 WDR24Q96S15 920 aa18.93■□□□□ 0.62
CCDC28A-203ENST00000617445 EIF2AK3Q9NZJ5 1116 aaKnown RBP18.93■□□□□ 0.62
CCDC28A-203ENST00000617445 CNOT6Q9ULM6 557 aaKnown RBP18.93■□□□□ 0.62
CCDC28A-203ENST00000617445 LOXL2Q9Y4K0 774 aa18.93■□□□□ 0.62
CCDC28A-203ENST00000617445 ST14Q9Y5Y6 855 aa18.93■□□□□ 0.62
CCDC28A-203ENST00000617445 MGAQ8IWI9 3026 aa18.93■□□□□ 0.62
CCDC28A-203ENST00000617445 A0A0A6YYK5 440 aaPredicted RBP18.92■□□□□ 0.62
CCDC28A-203ENST00000617445 PMS2P1A4D2B8 440 aa18.92■□□□□ 0.62
CCDC28A-203ENST00000617445 INPP4BO15327 924 aa18.92■□□□□ 0.62
CCDC28A-203ENST00000617445 SLC5A2P31639 672 aa18.92■□□□□ 0.62
CCDC28A-203ENST00000617445 CDKN2BP42772 138 aa18.92■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms