RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 TPP1O14773 563 aa17.22■□□□□ 0.35
SHKBP1-212ENST00000596163 FGGP02679 453 aa17.22■□□□□ 0.35
SHKBP1-212ENST00000596163 ATXN1LP0C7T5 689 aaKnown RBP17.22■□□□□ 0.35
SHKBP1-212ENST00000596163 CDK4P11802 303 aa17.22■□□□□ 0.35
SHKBP1-212ENST00000596163 PSMB4P28070 264 aa17.22■□□□□ 0.35
SHKBP1-212ENST00000596163 CCDC173Q0VFZ6 552 aa17.22■□□□□ 0.35
SHKBP1-212ENST00000596163 CCNG2Q16589 344 aa17.22■□□□□ 0.35
SHKBP1-212ENST00000596163 LONRF2Q1L5Z9 754 aa17.22■□□□□ 0.35
SHKBP1-212ENST00000596163 ALG11Q2TAA5 492 aa17.22■□□□□ 0.35
SHKBP1-212ENST00000596163 PRRT3Q5FWE3 981 aa17.22■□□□□ 0.35
SHKBP1-212ENST00000596163 SIRPB2Q5JXA9 342 aa17.22■□□□□ 0.35
SHKBP1-212ENST00000596163 ZDHHC20Q5W0Z9 365 aa17.22■□□□□ 0.35
SHKBP1-212ENST00000596163 HEATR4Q86WZ0 1026 aa17.22■□□□□ 0.35
SHKBP1-212ENST00000596163 GLMNQ92990 594 aa17.22■□□□□ 0.35
SHKBP1-212ENST00000596163 SCAMP4Q969E2 229 aa17.22■□□□□ 0.35
SHKBP1-212ENST00000596163 TSACCQ96A04 125 aaPredicted RBP17.22■□□□□ 0.35
SHKBP1-212ENST00000596163 TRMT1Q9NXH9 659 aaKnown RBP17.22■□□□□ 0.35
SHKBP1-212ENST00000596163 NCKIPSDQ9NZQ3 722 aa17.22■□□□□ 0.35
SHKBP1-212ENST00000596163 FEZ2Q9UHY8 353 aaPredicted RBP17.22■□□□□ 0.35
SHKBP1-212ENST00000596163 KLF15Q9UIH9 416 aa17.22■□□□□ 0.35
SHKBP1-212ENST00000596163 MOSPD1Q9UJG1 213 aa17.22■□□□□ 0.35
SHKBP1-212ENST00000596163 DOLKQ9UPQ8 538 aa17.22■□□□□ 0.35
SHKBP1-212ENST00000596163 MED19A0JLT2 244 aaPredicted RBP17.21■□□□□ 0.35
SHKBP1-212ENST00000596163 FFAR2O15552 330 aa17.21■□□□□ 0.35
SHKBP1-212ENST00000596163 SIGLEC6O43699 453 aa17.21■□□□□ 0.35
SHKBP1-212ENST00000596163 AGTP01019 485 aa17.21■□□□□ 0.35
SHKBP1-212ENST00000596163 ANXA6P08133 673 aa17.21■□□□□ 0.35
SHKBP1-212ENST00000596163 FTH1P19P0C7X4 201 aa17.21■□□□□ 0.35
SHKBP1-212ENST00000596163 PIRTP0C851 137 aa17.21■□□□□ 0.35
SHKBP1-212ENST00000596163 DUSP3P51452 185 aaPredicted RBP17.21■□□□□ 0.35
SHKBP1-212ENST00000596163 DCDC1P59894 354 aa17.21■□□□□ 0.35
SHKBP1-212ENST00000596163 CDK3Q00526 305 aa17.21■□□□□ 0.35
SHKBP1-212ENST00000596163 DRICH1Q6PGQ1 229 aaPredicted RBP17.21■□□□□ 0.35
SHKBP1-212ENST00000596163 GKN2Q86XP6 184 aa17.21■□□□□ 0.35
SHKBP1-212ENST00000596163 C1orf54Q8WWF1 131 aa17.21■□□□□ 0.35
SHKBP1-212ENST00000596163 ATG4AQ8WYN0 398 aa17.21■□□□□ 0.35
SHKBP1-212ENST00000596163 RTP4Q96DX8 246 aa17.21■□□□□ 0.35
SHKBP1-212ENST00000596163 HIC2Q96JB3 615 aa17.21■□□□□ 0.35
SHKBP1-212ENST00000596163 NAP1L3Q99457 506 aaPredicted RBP17.21■□□□□ 0.35
SHKBP1-212ENST00000596163 FICDQ9BVA6 458 aa17.21■□□□□ 0.35
SHKBP1-212ENST00000596163 LGR4Q9BXB1 951 aa17.21■□□□□ 0.35
SHKBP1-212ENST00000596163 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP17.21■□□□□ 0.35
SHKBP1-212ENST00000596163 DRG1Q9Y295 367 aaKnown RBP17.21■□□□□ 0.35
SHKBP1-212ENST00000596163 CABIN1Q9Y6J0 2220 aa17.21■□□□□ 0.35
SHKBP1-212ENST00000596163 TMEM202A6NGA9 273 aa17.2■□□□□ 0.34
SHKBP1-212ENST00000596163 LMO7DNF2Z398 122 aa17.2■□□□□ 0.34
SHKBP1-212ENST00000596163 PPFIA2O75334 1257 aa17.2■□□□□ 0.34
SHKBP1-212ENST00000596163 CKMT2P17540 419 aa17.2■□□□□ 0.34
SHKBP1-212ENST00000596163 HMGCLP35914 325 aa17.2■□□□□ 0.34
SHKBP1-212ENST00000596163 DAB2P98082 770 aa17.2■□□□□ 0.34
SHKBP1-212ENST00000596163 OASLQ15646 514 aaKnown RBP17.2■□□□□ 0.34
SHKBP1-212ENST00000596163 PDPK2PQ6A1A2 396 aa17.2■□□□□ 0.34
SHKBP1-212ENST00000596163 ZCCHC8Q6NZY4 707 aaKnown RBP17.2■□□□□ 0.34
SHKBP1-212ENST00000596163 LVRNQ6Q4G3 990 aa17.2■□□□□ 0.34
SHKBP1-212ENST00000596163 RANBP10Q6VN20 620 aa17.2■□□□□ 0.34
SHKBP1-212ENST00000596163 RFLNAQ6ZTI6 216 aa17.2■□□□□ 0.34
SHKBP1-212ENST00000596163 RBFAQ8N0V3 343 aa17.2■□□□□ 0.34
SHKBP1-212ENST00000596163 PELI3Q8N2H9 469 aa17.2■□□□□ 0.34
SHKBP1-212ENST00000596163 CCDC89Q8N998 374 aa17.2■□□□□ 0.34
SHKBP1-212ENST00000596163 FAM181AQ8N9Y4 354 aa17.2■□□□□ 0.34
SHKBP1-212ENST00000596163 BLOC1S5Q8TDH9 187 aa17.2■□□□□ 0.34
SHKBP1-212ENST00000596163 TBL1YQ9BQ87 522 aa17.2■□□□□ 0.34
SHKBP1-212ENST00000596163 ZSCAN5AQ9BUG6 496 aa17.2■□□□□ 0.34
SHKBP1-212ENST00000596163 LRRC61Q9BV99 259 aa17.2■□□□□ 0.34
SHKBP1-212ENST00000596163 LRRC40Q9H9A6 602 aa17.2■□□□□ 0.34
SHKBP1-212ENST00000596163 CYP4F12Q9HCS2 524 aa17.2■□□□□ 0.34
SHKBP1-212ENST00000596163 NFKBIL1Q9UBC1 381 aaPredicted RBP17.2■□□□□ 0.34
SHKBP1-212ENST00000596163 PCDHGA1Q9Y5H4 931 aa17.2■□□□□ 0.34
SHKBP1-212ENST00000596163 SPO11Q9Y5K1 396 aa17.2■□□□□ 0.34
SHKBP1-212ENST00000596163 CNOT1A5YKK6 2376 aaKnown RBP17.2■□□□□ 0.34
SHKBP1-212ENST00000596163 PRSS38A1L453 326 aa17.19■□□□□ 0.34
SHKBP1-212ENST00000596163 C2orf81A6NN90 581 aa17.19■□□□□ 0.34
SHKBP1-212ENST00000596163 TRIM38O00635 465 aa17.19■□□□□ 0.34
SHKBP1-212ENST00000596163 IFNB1P01574 187 aa17.19■□□□□ 0.34
SHKBP1-212ENST00000596163 SLC4A1P02730 911 aa17.19■□□□□ 0.34
SHKBP1-212ENST00000596163 CXCR5P32302 372 aa17.19■□□□□ 0.34
SHKBP1-212ENST00000596163 ADRA1AP35348 466 aa17.19■□□□□ 0.34
SHKBP1-212ENST00000596163 FDFT1P37268 417 aa17.19■□□□□ 0.34
SHKBP1-212ENST00000596163 CHRNA4P43681 627 aa17.19■□□□□ 0.34
SHKBP1-212ENST00000596163 RPIAP49247 311 aa17.19■□□□□ 0.34
SHKBP1-212ENST00000596163 PDE1BQ01064 536 aa17.19■□□□□ 0.34
SHKBP1-212ENST00000596163 ILKQ13418 452 aa17.19■□□□□ 0.34
SHKBP1-212ENST00000596163 C1orf61Q13536 156 aa17.19■□□□□ 0.34
SHKBP1-212ENST00000596163 SNX1Q13596 522 aa17.19■□□□□ 0.34
SHKBP1-212ENST00000596163 PEX6Q13608 980 aa17.19■□□□□ 0.34
SHKBP1-212ENST00000596163 PROX2Q3B8N5 592 aa17.19■□□□□ 0.34
SHKBP1-212ENST00000596163 HENMT1Q5T8I9 393 aaKnown RBP17.19■□□□□ 0.34
SHKBP1-212ENST00000596163 C4orf22Q6V702 233 aa17.19■□□□□ 0.34
SHKBP1-212ENST00000596163 GLT6D1Q7Z4J2 308 aa17.19■□□□□ 0.34
SHKBP1-212ENST00000596163 KLHDC8BQ8IXV7 354 aa17.19■□□□□ 0.34
SHKBP1-212ENST00000596163 SLC35F6Q8N357 371 aa17.19■□□□□ 0.34
SHKBP1-212ENST00000596163 TRAM1L1Q8N609 369 aa17.19■□□□□ 0.34
SHKBP1-212ENST00000596163 OR1E3Q8WZA6 343 aa17.19■□□□□ 0.34
SHKBP1-212ENST00000596163 PLEKHG4BQ96PX9 1271 aa17.19■□□□□ 0.34
SHKBP1-212ENST00000596163 SPATA16Q9BXB7 569 aa17.19■□□□□ 0.34
SHKBP1-212ENST00000596163 FRMD8Q9BZ67 464 aaPredicted RBP17.19■□□□□ 0.34
SHKBP1-212ENST00000596163 TCEAL2Q9H3H9 227 aaPredicted RBP17.19■□□□□ 0.34
SHKBP1-212ENST00000596163 FGF22Q9HCT0 170 aa17.19■□□□□ 0.34
SHKBP1-212ENST00000596163 PKP3Q9Y446 797 aa17.19■□□□□ 0.34
SHKBP1-212ENST00000596163 ERI2A8K979 691 aaKnown RBP17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms