RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 MMP2P08253 660 aa17.33■□□□□ 0.36
SHKBP1-212ENST00000596163 PDHA1P08559 390 aa17.33■□□□□ 0.36
SHKBP1-212ENST00000596163 RBP3P10745 1247 aa17.33■□□□□ 0.36
SHKBP1-212ENST00000596163 ZNF30P17039 623 aa17.33■□□□□ 0.36
SHKBP1-212ENST00000596163 KCNA4P22459 653 aa17.33■□□□□ 0.36
SHKBP1-212ENST00000596163 HNF1BP35680 557 aa17.33■□□□□ 0.36
SHKBP1-212ENST00000596163 GRK6P43250 576 aa17.33■□□□□ 0.36
SHKBP1-212ENST00000596163 PFN3P60673 137 aa17.33■□□□□ 0.36
SHKBP1-212ENST00000596163 WASHC5Q12768 1159 aa17.33■□□□□ 0.36
SHKBP1-212ENST00000596163 WSCD2Q2TBF2 565 aa17.33■□□□□ 0.36
SHKBP1-212ENST00000596163 PRAMEF14Q5SWL7 426 aa17.33■□□□□ 0.36
SHKBP1-212ENST00000596163 MEI1Q5TIA1 1274 aa17.33■□□□□ 0.36
SHKBP1-212ENST00000596163 DARS2Q6PI48 645 aaKnown RBP17.33■□□□□ 0.36
SHKBP1-212ENST00000596163 DEFB124Q8NES8 71 aa17.33■□□□□ 0.36
SHKBP1-212ENST00000596163 LPCAT1Q8NF37 534 aa17.33■□□□□ 0.36
SHKBP1-212ENST00000596163 ATL2Q8NHH9 583 aa17.33■□□□□ 0.36
SHKBP1-212ENST00000596163 RBM15Q96T37 977 aaKnown RBP eCLIP17.33■□□□□ 0.36
SHKBP1-212ENST00000596163 SPTY2D1-AS1A0A0U1RR47 76 aa17.32■□□□□ 0.36
SHKBP1-212ENST00000596163 CTPS1P17812 591 aa17.32■□□□□ 0.36
SHKBP1-212ENST00000596163 HTR1BP28222 390 aa17.32■□□□□ 0.36
SHKBP1-212ENST00000596163 RBL1P28749 1068 aa17.32■□□□□ 0.36
SHKBP1-212ENST00000596163 IGFALSP35858 605 aa17.32■□□□□ 0.36
SHKBP1-212ENST00000596163 FOXK2Q01167 660 aa17.32■□□□□ 0.36
SHKBP1-212ENST00000596163 CDK18Q07002 472 aa17.32■□□□□ 0.36
SHKBP1-212ENST00000596163 MTM1Q13496 603 aa17.32■□□□□ 0.36
SHKBP1-212ENST00000596163 PDE1CQ14123 709 aaPredicted RBP17.32■□□□□ 0.36
SHKBP1-212ENST00000596163 IRF4Q15306 451 aa17.32■□□□□ 0.36
SHKBP1-212ENST00000596163 CNGA3Q16281 694 aa17.32■□□□□ 0.36
SHKBP1-212ENST00000596163 ITPRIPL1Q6GPH6 555 aa17.32■□□□□ 0.36
SHKBP1-212ENST00000596163 AADACL2Q6P093 401 aa17.32■□□□□ 0.36
SHKBP1-212ENST00000596163 RAVER1Q8IY67 606 aaKnown RBP17.32■□□□□ 0.36
SHKBP1-212ENST00000596163 RHBDD1Q8TEB9 315 aa17.32■□□□□ 0.36
SHKBP1-212ENST00000596163 SRPK1Q96SB4 655 aaKnown RBP17.32■□□□□ 0.36
SHKBP1-212ENST00000596163 CDC6Q99741 560 aa17.32■□□□□ 0.36
SHKBP1-212ENST00000596163 HERPUD2Q9BSE4 406 aa17.32■□□□□ 0.36
SHKBP1-212ENST00000596163 MLPHQ9BV36 600 aaPredicted RBP17.32■□□□□ 0.36
SHKBP1-212ENST00000596163 MBNL1Q9NR56 388 aaKnown RBP17.32■□□□□ 0.36
SHKBP1-212ENST00000596163 GPR27Q9NS67 375 aa17.32■□□□□ 0.36
SHKBP1-212ENST00000596163 FAM153AQ9UHL3 310 aa17.32■□□□□ 0.36
SHKBP1-212ENST00000596163 CAPN8A6NHC0 703 aa17.31■□□□□ 0.36
SHKBP1-212ENST00000596163 NPIPB15A6NHN6 443 aaPredicted RBP17.31■□□□□ 0.36
SHKBP1-212ENST00000596163 ANKRD66B4E2M5 251 aa17.31■□□□□ 0.36
SHKBP1-212ENST00000596163 H3BM21 787 aa17.31■□□□□ 0.36
SHKBP1-212ENST00000596163 PRLP01236 227 aa17.31■□□□□ 0.36
SHKBP1-212ENST00000596163 EPHA8P29322 1005 aaPredicted RBP17.31■□□□□ 0.36
SHKBP1-212ENST00000596163 IL9RQ01113 521 aa17.31■□□□□ 0.36
SHKBP1-212ENST00000596163 DENND2CQ68D51 928 aa17.31■□□□□ 0.36
SHKBP1-212ENST00000596163 PSAPL1Q6NUJ1 521 aa17.31■□□□□ 0.36
SHKBP1-212ENST00000596163 PARGQ86W56 976 aa17.31■□□□□ 0.36
SHKBP1-212ENST00000596163 ZNF567Q8N184 647 aa17.31■□□□□ 0.36
SHKBP1-212ENST00000596163 CBARPQ8N350 705 aaPredicted RBP17.31■□□□□ 0.36
SHKBP1-212ENST00000596163 SAP25Q8TEE9 199 aa17.31■□□□□ 0.36
SHKBP1-212ENST00000596163 BTN2A2Q8WVV5 523 aa17.31■□□□□ 0.36
SHKBP1-212ENST00000596163 NUS1Q96E22 293 aa17.31■□□□□ 0.36
SHKBP1-212ENST00000596163 COQ10AQ96MF6 247 aa17.31■□□□□ 0.36
SHKBP1-212ENST00000596163 PPP1R2P1Q96PQ5 205 aa17.31■□□□□ 0.36
SHKBP1-212ENST00000596163 FCRL5Q96RD9 977 aa17.31■□□□□ 0.36
SHKBP1-212ENST00000596163 LYSMD1Q96S90 227 aa17.31■□□□□ 0.36
SHKBP1-212ENST00000596163 FRMD8P1Q9BZ68 369 aaPredicted RBP17.31■□□□□ 0.36
SHKBP1-212ENST00000596163 CARD9Q9H257 536 aa17.31■□□□□ 0.36
SHKBP1-212ENST00000596163 TRPM6Q9BX84 2022 aa17.31■□□□□ 0.36
SHKBP1-212ENST00000596163 PDE2AO00408 941 aaPredicted RBP17.3■□□□□ 0.36
SHKBP1-212ENST00000596163 PCCBP05166 539 aa17.3■□□□□ 0.36
SHKBP1-212ENST00000596163 ALPIP09923 528 aa17.3■□□□□ 0.36
SHKBP1-212ENST00000596163 NFKB1P19838 968 aa17.3■□□□□ 0.36
SHKBP1-212ENST00000596163 KELP23276 732 aa17.3■□□□□ 0.36
SHKBP1-212ENST00000596163 HNRNPKP61978 463 aaKnown RBP eCLIP17.3■□□□□ 0.36
SHKBP1-212ENST00000596163 FZD2Q14332 565 aa17.3■□□□□ 0.36
SHKBP1-212ENST00000596163 PRPSAP1Q14558 356 aa17.3■□□□□ 0.36
SHKBP1-212ENST00000596163 IHHQ14623 411 aa17.3■□□□□ 0.36
SHKBP1-212ENST00000596163 INPP5AQ14642 412 aa17.3■□□□□ 0.36
SHKBP1-212ENST00000596163 GSE1Q14687 1217 aa17.3■□□□□ 0.36
SHKBP1-212ENST00000596163 SHBQ15464 509 aa17.3■□□□□ 0.36
SHKBP1-212ENST00000596163 TRIP6Q15654 476 aaKnown RBP17.3■□□□□ 0.36
SHKBP1-212ENST00000596163 QPCTQ16769 361 aa17.3■□□□□ 0.36
SHKBP1-212ENST00000596163 HS1BP3Q53T59 392 aa17.3■□□□□ 0.36
SHKBP1-212ENST00000596163 CRTC1Q6UUV9 634 aa17.3■□□□□ 0.36
SHKBP1-212ENST00000596163 SLC22A18ASQ8N1D0 253 aa17.3■□□□□ 0.36
SHKBP1-212ENST00000596163 CCHCR1Q8TD31 782 aa17.3■□□□□ 0.36
SHKBP1-212ENST00000596163 TADA1Q96BN2 335 aa17.3■□□□□ 0.36
SHKBP1-212ENST00000596163 PDLIM2Q96JY6 352 aa17.3■□□□□ 0.36
SHKBP1-212ENST00000596163 APOOQ9BUR5 198 aa17.3■□□□□ 0.36
SHKBP1-212ENST00000596163 DNAJC28Q9NX36 388 aa17.3■□□□□ 0.36
SHKBP1-212ENST00000596163 RSPH14Q9UHP6 348 aa17.3■□□□□ 0.36
SHKBP1-212ENST00000596163 PCOLCE2Q9UKZ9 415 aa17.3■□□□□ 0.36
SHKBP1-212ENST00000596163 PLXNA2O75051 1894 aa17.3■□□□□ 0.36
SHKBP1-212ENST00000596163 SPTBN4Q9H254 2564 aa17.3■□□□□ 0.36
SHKBP1-212ENST00000596163 SHROOM3Q8TF72 1996 aa17.29■□□□□ 0.36
SHKBP1-212ENST00000596163 NEMP2A6NFY4 417 aa17.29■□□□□ 0.36
SHKBP1-212ENST00000596163 CACNB4O00305 520 aaPredicted RBP17.29■□□□□ 0.36
SHKBP1-212ENST00000596163 KCNN4O15554 427 aa17.29■□□□□ 0.36
SHKBP1-212ENST00000596163 PMPCBO75439 489 aa17.29■□□□□ 0.36
SHKBP1-212ENST00000596163 ANXA9O76027 345 aa17.29■□□□□ 0.36
SHKBP1-212ENST00000596163 NDST3O95803 873 aa17.29■□□□□ 0.36
SHKBP1-212ENST00000596163 EPOP01588 193 aa17.29■□□□□ 0.36
SHKBP1-212ENST00000596163 CSF2P04141 144 aa17.29■□□□□ 0.36
SHKBP1-212ENST00000596163 PYGLP06737 847 aa17.29■□□□□ 0.36
SHKBP1-212ENST00000596163 HOXC4P09017 264 aaPredicted RBP17.29■□□□□ 0.36
SHKBP1-212ENST00000596163 LHCGRP22888 699 aa17.29■□□□□ 0.36
SHKBP1-212ENST00000596163 MSNP26038 577 aaKnown RBP17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms