RNA–Protein interactions for RNA: ENST00000555067.1

VRK1-203, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 604 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-203ENST00000555067 Q6ZVU0 165 aa12.57□□□□□ -0.4
VRK1-203ENST00000555067 TSC1Q92574 1164 aa12.56□□□□□ -0.4
VRK1-203ENST00000555067 GPKOWQ92917 476 aaPredicted RBP eCLIP12.56□□□□□ -0.4
VRK1-203ENST00000555067 SPINT1O43278 529 aa12.55□□□□□ -0.4
VRK1-203ENST00000555067 GDF11O95390 407 aa12.55□□□□□ -0.4
VRK1-203ENST00000555067 COL25A1Q9BXS0 654 aaPredicted RBP12.55□□□□□ -0.4
VRK1-203ENST00000555067 MAGEB6P1A0A0J9YX57 407 aa12.54□□□□□ -0.4
VRK1-203ENST00000555067 NUTM2BA6NNL0 878 aaPredicted RBP12.54□□□□□ -0.4
VRK1-203ENST00000555067 NUTM2EB1AL46 878 aaPredicted RBP12.54□□□□□ -0.4
VRK1-203ENST00000555067 RNF225M0QZC1 329 aaPredicted RBP12.54□□□□□ -0.4
VRK1-203ENST00000555067 ERFEQ4G0M1 354 aa12.54□□□□□ -0.4
VRK1-203ENST00000555067 NUTM2DQ5VT03 806 aaPredicted RBP12.54□□□□□ -0.4
VRK1-203ENST00000555067 NUTM2AQ8IVF1 878 aaPredicted RBP12.54□□□□□ -0.4
VRK1-203ENST00000555067 PPP1R26Q5T8A7 1209 aaPredicted RBP12.53□□□□□ -0.4
VRK1-203ENST00000555067 ZNF385CQ66K41 422 aaPredicted RBP12.53□□□□□ -0.4
VRK1-203ENST00000555067 SLC35F4A4IF30 521 aa12.52□□□□□ -0.41
VRK1-203ENST00000555067 FIGNL2A6NMB9 653 aa12.52□□□□□ -0.41
VRK1-203ENST00000555067 CBLBQ13191 982 aa12.52□□□□□ -0.41
VRK1-203ENST00000555067 RTL5Q5HYW3 569 aaPredicted RBP12.52□□□□□ -0.41
VRK1-203ENST00000555067 RNFT1Q5M7Z0 435 aa12.52□□□□□ -0.41
VRK1-203ENST00000555067 CCDC155Q8N6L0 562 aa12.52□□□□□ -0.41
VRK1-203ENST00000555067 HELBQ8NG08 1087 aaPredicted RBP12.52□□□□□ -0.41
VRK1-203ENST00000555067 CARD14Q9BXL6 1004 aa12.5□□□□□ -0.41
VRK1-203ENST00000555067 PGPEP1Q9NXJ5 209 aa12.5□□□□□ -0.41
VRK1-203ENST00000555067 SLURP2P0DP57 97 aa12.49□□□□□ -0.41
VRK1-203ENST00000555067 ARHGEF15O94989 841 aa12.47□□□□□ -0.41
VRK1-203ENST00000555067 PDXDC2PQ6P474 469 aa12.46□□□□□ -0.41
VRK1-203ENST00000555067 WHAMMQ8TF30 809 aa12.46□□□□□ -0.41
VRK1-203ENST00000555067 ITGA6P23229 1130 aa12.45□□□□□ -0.42
VRK1-203ENST00000555067 SVOPQ8N4V2 548 aa12.45□□□□□ -0.42
VRK1-203ENST00000555067 CDV3Q9UKY7 258 aaKnown RBP12.45□□□□□ -0.42
VRK1-203ENST00000555067 KCTD15Q96SI1 283 aaPredicted RBP12.44□□□□□ -0.42
VRK1-203ENST00000555067 CLK2P49760 499 aaKnown RBP12.43□□□□□ -0.42
VRK1-203ENST00000555067 VWA5B2Q8N398 1253 aa12.43□□□□□ -0.42
VRK1-203ENST00000555067 CTSOP43234 321 aaPredicted RBP12.42□□□□□ -0.42
VRK1-203ENST00000555067 CTDSPL2Q05D32 466 aa12.41□□□□□ -0.42
VRK1-203ENST00000555067 DHX9Q08211 1270 aaKnown RBP12.41□□□□□ -0.42
VRK1-203ENST00000555067 SV2AQ7L0J3 742 aa12.41□□□□□ -0.42
VRK1-203ENST00000555067 ARHGAP9Q9BRR9 750 aa12.41□□□□□ -0.42
VRK1-203ENST00000555067 DNMT3AQ9Y6K1 912 aaPredicted RBP12.41□□□□□ -0.42
VRK1-203ENST00000555067 INTS6LQ5JSJ4 861 aaKnown RBP12.4□□□□□ -0.42
VRK1-203ENST00000555067 SLC10A4Q96EP9 437 aa12.4□□□□□ -0.42
VRK1-203ENST00000555067 AGBL1Q96MI9 1066 aa12.4□□□□□ -0.42
VRK1-203ENST00000555067 SENP3-EIF4A1A0A087X0R7 540 aa12.39□□□□□ -0.43
VRK1-203ENST00000555067 RSPH6AQ9H0K4 717 aa12.39□□□□□ -0.43
VRK1-203ENST00000555067 FKBPLQ9UIM3 349 aa12.39□□□□□ -0.43
VRK1-203ENST00000555067 RNF217Q8TC41 542 aa12.38□□□□□ -0.43
VRK1-203ENST00000555067 INSM2Q96T92 566 aaPredicted RBP12.38□□□□□ -0.43
VRK1-203ENST00000555067 OCSTAMPQ9BR26 566 aa12.38□□□□□ -0.43
VRK1-203ENST00000555067 ZC3H4Q9UPT8 1303 aaKnown RBP12.37□□□□□ -0.43
VRK1-203ENST00000555067 CDC14CA4D256 554 aa12.37□□□□□ -0.43
VRK1-203ENST00000555067 IRS1P35568 1242 aa12.36□□□□□ -0.43
VRK1-203ENST00000555067 RELBQ01201 579 aa12.36□□□□□ -0.43
VRK1-203ENST00000555067 IGHA1P01876 353 aa12.35□□□□□ -0.43
VRK1-203ENST00000555067 KANK3Q6NY19 840 aa12.35□□□□□ -0.43
VRK1-203ENST00000555067 LRRN4Q8WUT4 740 aa12.35□□□□□ -0.43
VRK1-203ENST00000555067 ZBTB33Q86T24 672 aa12.34□□□□□ -0.43
VRK1-203ENST00000555067 POLMQ9NP87 494 aaPredicted RBP12.33□□□□□ -0.44
VRK1-203ENST00000555067 POLR3EQ9NVU0 708 aa12.33□□□□□ -0.44
VRK1-203ENST00000555067 ADAMTS2O95450 1211 aa12.32□□□□□ -0.44
VRK1-203ENST00000555067 GPAT2Q6NUI2 795 aa12.32□□□□□ -0.44
VRK1-203ENST00000555067 LYPD4Q6UWN0 246 aa12.32□□□□□ -0.44
VRK1-203ENST00000555067 MARSP56192 900 aaKnown RBP12.31□□□□□ -0.44
VRK1-203ENST00000555067 FOXK2Q01167 660 aa12.31□□□□□ -0.44
VRK1-203ENST00000555067 FOXD4L5Q5VV16 416 aaPredicted RBP12.31□□□□□ -0.44
VRK1-203ENST00000555067 SCARF2Q96GP6 870 aaPredicted RBP12.31□□□□□ -0.44
VRK1-203ENST00000555067 DDRGK1Q96HY6 314 aa12.31□□□□□ -0.44
VRK1-203ENST00000555067 KDM4CQ9H3R0 1056 aa12.31□□□□□ -0.44
VRK1-203ENST00000555067 GPSM3Q9Y4H4 160 aa12.31□□□□□ -0.44
VRK1-203ENST00000555067 SRSF11Q05519 484 aaKnown RBP12.3□□□□□ -0.44
VRK1-203ENST00000555067 NR6A1Q15406 480 aa12.3□□□□□ -0.44
VRK1-203ENST00000555067 KDF1Q8NAX2 398 aaPredicted RBP12.3□□□□□ -0.44
VRK1-203ENST00000555067 ZNF395Q9H8N7 513 aaPredicted RBP12.3□□□□□ -0.44
VRK1-203ENST00000555067 TMPRSS4Q9NRS4 437 aa12.3□□□□□ -0.44
VRK1-203ENST00000555067 ADH1AP07327 375 aa12.29□□□□□ -0.44
VRK1-203ENST00000555067 GAS6Q14393 721 aa12.29□□□□□ -0.44
VRK1-203ENST00000555067 FBXO31Q5XUX0 539 aaPredicted RBP12.29□□□□□ -0.44
VRK1-203ENST00000555067 LILRA1O75019 489 aa12.28□□□□□ -0.44
VRK1-203ENST00000555067 PTK2Q05397 1052 aa12.28□□□□□ -0.44
VRK1-203ENST00000555067 ZNF784Q8NCA9 323 aaPredicted RBP12.28□□□□□ -0.44
VRK1-203ENST00000555067 ADAM32Q8TC27 787 aa12.28□□□□□ -0.44
VRK1-203ENST00000555067 GPBP1L1Q9HC44 474 aaPredicted RBP12.28□□□□□ -0.44
VRK1-203ENST00000555067 CUEDC1Q9NWM3 386 aaPredicted RBP12.28□□□□□ -0.44
VRK1-203ENST00000555067 ADD1P35611 737 aaKnown RBP12.27□□□□□ -0.45
VRK1-203ENST00000555067 CELA2BP08218 269 aaPredicted RBP12.26□□□□□ -0.45
VRK1-203ENST00000555067 NBPF20Q3BBV1 942 aa12.26□□□□□ -0.45
VRK1-203ENST00000555067 PTGIRP43119 386 aa12.25□□□□□ -0.45
VRK1-203ENST00000555067 SH3D19Q5HYK7 790 aa12.25□□□□□ -0.45
VRK1-203ENST00000555067 SKIV2LQ15477 1246 aaKnown RBP12.24□□□□□ -0.45
VRK1-203ENST00000555067 PPP2R2DQ66LE6 453 aa12.24□□□□□ -0.45
VRK1-203ENST00000555067 ESPNB1AK53 854 aa12.23□□□□□ -0.45
VRK1-203ENST00000555067 LYSMD3Q7Z3D4 306 aa12.23□□□□□ -0.45
VRK1-203ENST00000555067 FAM117AQ9C073 453 aa12.23□□□□□ -0.45
VRK1-203ENST00000555067 ERVH48-1M5A8F1 160 aa12.22□□□□□ -0.45
VRK1-203ENST00000555067 MAP3K10Q02779 954 aa12.22□□□□□ -0.45
VRK1-203ENST00000555067 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.22□□□□□ -0.45
VRK1-203ENST00000555067 RNF144AP50876 292 aaPredicted RBP12.19□□□□□ -0.46
VRK1-203ENST00000555067 EPS8L1Q8TE68 723 aa12.19□□□□□ -0.46
VRK1-203ENST00000555067 GMCL1Q96IK5 515 aa12.19□□□□□ -0.46
VRK1-203ENST00000555067 ZNF837Q96EG3 531 aaPredicted RBP12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms