RNA–Protein interactions for RNA: ENST00000439369.6

SCLT1-202, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 966 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-202ENST00000439369 COL18A1P39060 1754 aa17.01■□□□□ 0.31
SCLT1-202ENST00000439369 COL14A1Q05707 1796 aaKnown RBP17.01■□□□□ 0.31
SCLT1-202ENST00000439369 LMO7Q8WWI1 1683 aa17.01■□□□□ 0.31
SCLT1-202ENST00000439369 DIAPH1O60610 1272 aaKnown RBP16.99■□□□□ 0.31
SCLT1-202ENST00000439369 PLEKHG5O94827 1062 aa16.99■□□□□ 0.31
SCLT1-202ENST00000439369 NUDCQ9Y266 331 aa16.99■□□□□ 0.31
SCLT1-202ENST00000439369 CCDC184Q52MB2 194 aa16.97■□□□□ 0.31
SCLT1-202ENST00000439369 HSP90AB2PQ58FF8 381 aa16.97■□□□□ 0.31
SCLT1-202ENST00000439369 PNISRQ8TF01 805 aaKnown RBP16.97■□□□□ 0.31
SCLT1-202ENST00000439369 FAM83GA6ND36 823 aa16.96■□□□□ 0.31
SCLT1-202ENST00000439369 IL13P35225 146 aa16.96■□□□□ 0.31
SCLT1-202ENST00000439369 FAM208AQ9UK61 1670 aaKnown RBP16.96■□□□□ 0.31
SCLT1-202ENST00000439369 CAMTA1Q9Y6Y1 1673 aa16.95■□□□□ 0.3
SCLT1-202ENST00000439369 ZBTB7CA1YPR0 619 aa16.95■□□□□ 0.3
SCLT1-202ENST00000439369 NUTM2BA6NNL0 878 aaPredicted RBP16.95■□□□□ 0.3
SCLT1-202ENST00000439369 NUTM2EB1AL46 878 aaPredicted RBP16.95■□□□□ 0.3
SCLT1-202ENST00000439369 EIF4A2Q14240 407 aaKnown RBP16.95■□□□□ 0.3
SCLT1-202ENST00000439369 WDR43Q15061 677 aaKnown RBP eCLIP16.95■□□□□ 0.32e-6■■■■■ 30.3
SCLT1-202ENST00000439369 CHRNA2Q15822 529 aa16.95■□□□□ 0.3
SCLT1-202ENST00000439369 NUTM2AQ8IVF1 878 aaPredicted RBP16.95■□□□□ 0.3
SCLT1-202ENST00000439369 NWD2Q9ULI1 1742 aa16.95■□□□□ 0.3
SCLT1-202ENST00000439369 LRP6O75581 1613 aa16.95■□□□□ 0.3
SCLT1-202ENST00000439369 ERBB3P21860 1342 aa16.95■□□□□ 0.3
SCLT1-202ENST00000439369 COL5A2P05997 1499 aaPredicted RBP16.94■□□□□ 0.3
SCLT1-202ENST00000439369 RGPD1P0DJD0 1748 aa16.94■□□□□ 0.3
SCLT1-202ENST00000439369 AXIN2Q9Y2T1 843 aa16.94■□□□□ 0.3
SCLT1-202ENST00000439369 SLIT2O94813 1529 aa16.93■□□□□ 0.3
SCLT1-202ENST00000439369 ADAMTS2O95450 1211 aa16.93■□□□□ 0.3
SCLT1-202ENST00000439369 ANKRD24Q8TF21 1146 aa16.93■□□□□ 0.3
SCLT1-202ENST00000439369 NCAPD2Q15021 1401 aa16.93■□□□□ 0.3
SCLT1-202ENST00000439369 PLCH1Q4KWH8 1693 aa16.92■□□□□ 0.3
SCLT1-202ENST00000439369 WDR17Q8IZU2 1322 aa16.92■□□□□ 0.3
SCLT1-202ENST00000439369 IGSF1Q8N6C5 1336 aa16.92■□□□□ 0.3
SCLT1-202ENST00000439369 PLEKHG2Q9H7P9 1386 aa16.91■□□□□ 0.3
SCLT1-202ENST00000439369 PNNQ9H307 717 aaKnown RBP16.91■□□□□ 0.3
SCLT1-202ENST00000439369 RGPD5Q99666 1765 aa16.9■□□□□ 0.3
SCLT1-202ENST00000439369 FNBP4Q8N3X1 1017 aaPredicted RBP16.9■□□□□ 0.3
SCLT1-202ENST00000439369 BTG4Q9NY30 223 aa16.9■□□□□ 0.3
SCLT1-202ENST00000439369 NRAPQ86VF7 1730 aa16.9■□□□□ 0.3
SCLT1-202ENST00000439369 KDRP35968 1356 aa16.89■□□□□ 0.3
SCLT1-202ENST00000439369 U2SURPO15042 1029 aaKnown RBP16.89■□□□□ 0.29
SCLT1-202ENST00000439369 FCHSD2O94868 740 aa16.89■□□□□ 0.29
SCLT1-202ENST00000439369 U2AF1L5P0DN76 240 aaPredicted RBP16.89■□□□□ 0.29
SCLT1-202ENST00000439369 U2AF1Q01081 240 aaKnown RBP eCLIP16.89■□□□□ 0.29
SCLT1-202ENST00000439369 MEX3CQ5U5Q3 659 aaKnown RBP16.89■□□□□ 0.29
SCLT1-202ENST00000439369 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.88■□□□□ 0.29
SCLT1-202ENST00000439369 EVA1CP58658 441 aa16.88■□□□□ 0.29
SCLT1-202ENST00000439369 NGLY1Q96IV0 654 aa16.88■□□□□ 0.29
SCLT1-202ENST00000439369 EYA1Q99502 592 aa16.88■□□□□ 0.29
SCLT1-202ENST00000439369 CRB1P82279 1406 aa16.87■□□□□ 0.29
SCLT1-202ENST00000439369 CSB-PGBD3P0DP91 1061 aa16.87■□□□□ 0.29
SCLT1-202ENST00000439369 LTV1Q96GA3 475 aaPredicted RBP16.87■□□□□ 0.29
SCLT1-202ENST00000439369 C8orf37Q96NL8 207 aa16.87■□□□□ 0.29
SCLT1-202ENST00000439369 CARD10Q9BWT7 1032 aa16.87■□□□□ 0.29
SCLT1-202ENST00000439369 ADAMTS8Q9UP79 889 aa16.87■□□□□ 0.29
SCLT1-202ENST00000439369 FAM9BQ8IZU0 186 aa16.86■□□□□ 0.29
SCLT1-202ENST00000439369 NBPF6Q5VWK0 638 aa16.85■□□□□ 0.29
SCLT1-202ENST00000439369 UNC5CLQ8IV45 518 aa16.85■□□□□ 0.29
SCLT1-202ENST00000439369 NBPF4Q96M43 638 aa16.85■□□□□ 0.29
SCLT1-202ENST00000439369 NLRP2Q9NX02 1062 aa16.85■□□□□ 0.29
SCLT1-202ENST00000439369 BCL9LQ86UU0 1499 aa16.85■□□□□ 0.29
SCLT1-202ENST00000439369 SULT6B1Q6IMI4 303 aa16.84■□□□□ 0.29
SCLT1-202ENST00000439369 TOM1L2Q6ZVM7 507 aa16.84■□□□□ 0.29
SCLT1-202ENST00000439369 RSPH6AQ9H0K4 717 aa16.84■□□□□ 0.29
SCLT1-202ENST00000439369 VPS72Q15906 364 aa16.83■□□□□ 0.28
SCLT1-202ENST00000439369 LARP1Q6PKG0 1096 aaKnown RBP16.83■□□□□ 0.28
SCLT1-202ENST00000439369 RUNDC1Q96C34 613 aa16.83■□□□□ 0.28
SCLT1-202ENST00000439369 STRN4Q9NRL3 753 aa16.83■□□□□ 0.28
SCLT1-202ENST00000439369 NEFMP07197 916 aa16.82■□□□□ 0.28
SCLT1-202ENST00000439369 NGEFQ8N5V2 710 aa16.82■□□□□ 0.28
SCLT1-202ENST00000439369 USP21Q9UK80 565 aa16.82■□□□□ 0.28
SCLT1-202ENST00000439369 THRAP3Q9Y2W1 955 aaKnown RBP16.82■□□□□ 0.28
SCLT1-202ENST00000439369 AFF2P51816 1311 aa16.81■□□□□ 0.28
SCLT1-202ENST00000439369 HMOX1P09601 288 aa16.81■□□□□ 0.28
SCLT1-202ENST00000439369 NCBP3Q53F19 620 aaKnown RBP16.81■□□□□ 0.28
SCLT1-202ENST00000439369 PLEKHF1Q96S99 279 aa16.81■□□□□ 0.28
SCLT1-202ENST00000439369 RGPD2P0DJD1 1756 aa16.81■□□□□ 0.28
SCLT1-202ENST00000439369 SPATA31A5Q5VU36 1347 aa16.8■□□□□ 0.28
SCLT1-202ENST00000439369 SPATA31A7Q8IWB4 1347 aa16.8■□□□□ 0.28
SCLT1-202ENST00000439369 PRKAR2BP31323 418 aa16.8■□□□□ 0.28
SCLT1-202ENST00000439369 AEBP1Q8IUX7 1158 aa16.8■□□□□ 0.28
SCLT1-202ENST00000439369 CDCA7Q9BWT1 371 aaPredicted RBP16.8■□□□□ 0.28
SCLT1-202ENST00000439369 SPATA31A1Q5TZJ5 1347 aa16.79■□□□□ 0.28
SCLT1-202ENST00000439369 MAPK8IP3Q9UPT6 1336 aa16.79■□□□□ 0.28
SCLT1-202ENST00000439369 RAPGEF4Q8WZA2 1011 aa16.79■□□□□ 0.28
SCLT1-202ENST00000439369 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.79■□□□□ 0.287e-6■■□□□ 12.8
SCLT1-202ENST00000439369 ATRNO75882 1429 aa16.79■□□□□ 0.28
SCLT1-202ENST00000439369 TCP11L2Q8N4U5 519 aa16.78■□□□□ 0.28
SCLT1-202ENST00000439369 USHBP1Q8N6Y0 703 aa16.78■□□□□ 0.28
SCLT1-202ENST00000439369 TRPC5Q9UL62 973 aaPredicted RBP16.78■□□□□ 0.28
SCLT1-202ENST00000439369 PARP4Q9UKK3 1724 aaKnown RBP16.78■□□□□ 0.28
SCLT1-202ENST00000439369 OVOS2A0A0G2JMS6 1433 aa16.78■□□□□ 0.28
SCLT1-202ENST00000439369 TATP17735 454 aaPredicted RBP16.77■□□□□ 0.28
SCLT1-202ENST00000439369 AMOTQ4VCS5 1084 aa16.77■□□□□ 0.28
SCLT1-202ENST00000439369 ZNF772Q68DY9 489 aaPredicted RBP16.77■□□□□ 0.28
SCLT1-202ENST00000439369 BARGINQ6ZT62 677 aa16.77■□□□□ 0.28
SCLT1-202ENST00000439369 DISP2A7MBM2 1401 aa16.77■□□□□ 0.27
SCLT1-202ENST00000439369 IL2RBP14784 551 aa16.76■□□□□ 0.27
SCLT1-202ENST00000439369 ILDR1Q86SU0 546 aaPredicted RBP16.76■□□□□ 0.27
SCLT1-202ENST00000439369 PLEKHO1Q53GL0 409 aaPredicted RBP16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms