RNA–Protein interactions for RNA: ENST00000262570.9

CHCHD3-201, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHCHD3, Length 1,598 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-201ENST00000262570 AFF2P51816 1311 aa22.52■■□□□ 1.2
CHCHD3-201ENST00000262570 RTL1A6NKG5 1358 aa22.52■■□□□ 1.2
CHCHD3-201ENST00000262570 CAMTA1Q9Y6Y1 1673 aa22.52■■□□□ 1.2
CHCHD3-201ENST00000262570 PPM1GO15355 546 aaPredicted RBP22.51■■□□□ 1.19
CHCHD3-201ENST00000262570 SMG6Q86US8 1419 aaKnown RBP22.51■■□□□ 1.19
CHCHD3-201ENST00000262570 MAP2P11137 1827 aaKnown RBP22.51■■□□□ 1.19
CHCHD3-201ENST00000262570 PPP2R1AP30153 589 aa22.5■■□□□ 1.19
CHCHD3-201ENST00000262570 MTHFSP49914 203 aa22.5■■□□□ 1.19
CHCHD3-201ENST00000262570 FLT4P35916 1363 aa22.5■■□□□ 1.19
CHCHD3-201ENST00000262570 BCL9LQ86UU0 1499 aa22.5■■□□□ 1.19
CHCHD3-201ENST00000262570 HSP90AB2PQ58FF8 381 aa22.5■■□□□ 1.19
CHCHD3-201ENST00000262570 UNC5CLQ8IV45 518 aa22.5■■□□□ 1.19
CHCHD3-201ENST00000262570 USP21Q9UK80 565 aa22.5■■□□□ 1.19
CHCHD3-201ENST00000262570 BLMP54132 1417 aaPredicted RBP22.49■■□□□ 1.19
CHCHD3-201ENST00000262570 PEAK1Q9H792 1746 aa22.49■■□□□ 1.19
CHCHD3-201ENST00000262570 PLCH1Q4KWH8 1693 aa22.49■■□□□ 1.19
CHCHD3-201ENST00000262570 INSRP06213 1382 aa22.47■■□□□ 1.19
CHCHD3-201ENST00000262570 COL5A2P05997 1499 aaPredicted RBP22.47■■□□□ 1.19
CHCHD3-201ENST00000262570 NWD2Q9ULI1 1742 aa22.47■■□□□ 1.19
CHCHD3-201ENST00000262570 ANP32CO43423 234 aa22.46■■□□□ 1.19
CHCHD3-201ENST00000262570 ERBB3P21860 1342 aa22.46■■□□□ 1.19
CHCHD3-201ENST00000262570 EVA1CP58658 441 aa22.46■■□□□ 1.19
CHCHD3-201ENST00000262570 STRN4Q9NRL3 753 aa22.46■■□□□ 1.19
CHCHD3-201ENST00000262570 CDK12Q9NYV4 1490 aaPredicted RBP22.45■■□□□ 1.18
CHCHD3-201ENST00000262570 ZNF772Q68DY9 489 aaPredicted RBP22.45■■□□□ 1.18
CHCHD3-201ENST00000262570 ANKRD24Q8TF21 1146 aa22.45■■□□□ 1.18
CHCHD3-201ENST00000262570 RGS17Q9UGC6 210 aaPredicted RBP22.45■■□□□ 1.18
CHCHD3-201ENST00000262570 MYBBP1AQ9BQG0 1328 aaKnown RBP22.44■■□□□ 1.18
CHCHD3-201ENST00000262570 DIEXFQ68CQ4 756 aaKnown RBP22.44■■□□□ 1.18
CHCHD3-201ENST00000262570 PHF23Q9BUL5 403 aaPredicted RBP22.44■■□□□ 1.18
CHCHD3-201ENST00000262570 RGPD5Q99666 1765 aa22.43■■□□□ 1.18
CHCHD3-201ENST00000262570 WDR17Q8IZU2 1322 aa22.43■■□□□ 1.18
CHCHD3-201ENST00000262570 NRAPQ86VF7 1730 aa22.43■■□□□ 1.18
CHCHD3-201ENST00000262570 LARP1Q6PKG0 1096 aaKnown RBP22.42■■□□□ 1.18
CHCHD3-201ENST00000262570 VPS72Q15906 364 aa22.42■■□□□ 1.18
CHCHD3-201ENST00000262570 LTV1Q96GA3 475 aaPredicted RBP22.42■■□□□ 1.18
CHCHD3-201ENST00000262570 TRPC5Q9UL62 973 aaPredicted RBP22.42■■□□□ 1.18
CHCHD3-201ENST00000262570 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.41■■□□□ 1.18
CHCHD3-201ENST00000262570 CSB-PGBD3P0DP91 1061 aa22.41■■□□□ 1.18
CHCHD3-201ENST00000262570 QTRT2Q9H974 415 aaKnown RBP22.41■■□□□ 1.18
CHCHD3-201ENST00000262570 EIF4A2Q14240 407 aaKnown RBP22.4■■□□□ 1.18
CHCHD3-201ENST00000262570 ATRNO75882 1429 aa22.4■■□□□ 1.18
CHCHD3-201ENST00000262570 TOM1L2Q6ZVM7 507 aa22.38■■□□□ 1.17
CHCHD3-201ENST00000262570 CRB1P82279 1406 aa22.38■■□□□ 1.17
CHCHD3-201ENST00000262570 CFAP53Q96M91 514 aa22.38■■□□□ 1.17
CHCHD3-201ENST00000262570 SPATA31A5Q5VU36 1347 aa22.37■■□□□ 1.17
CHCHD3-201ENST00000262570 SPATA31A7Q8IWB4 1347 aa22.37■■□□□ 1.17
CHCHD3-201ENST00000262570 IL13P35225 146 aa22.37■■□□□ 1.17
CHCHD3-201ENST00000262570 GJD4Q96KN9 370 aaPredicted RBP22.37■■□□□ 1.17
CHCHD3-201ENST00000262570 SPATA31A1Q5TZJ5 1347 aa22.36■■□□□ 1.17
CHCHD3-201ENST00000262570 COL3A1P02461 1466 aaPredicted RBP22.36■■□□□ 1.17
CHCHD3-201ENST00000262570 DIAPH1O60610 1272 aaKnown RBP22.36■■□□□ 1.17
CHCHD3-201ENST00000262570 CARD10Q9BWT7 1032 aa22.36■■□□□ 1.17
CHCHD3-201ENST00000262570 NLRP2Q9NX02 1062 aa22.36■■□□□ 1.17
CHCHD3-201ENST00000262570 CCDC9Q9Y3X0 531 aaKnown RBP22.36■■□□□ 1.17
CHCHD3-201ENST00000262570 NBPF6Q5VWK0 638 aa22.35■■□□□ 1.17
CHCHD3-201ENST00000262570 POTEAQ6S8J7 498 aa22.35■■□□□ 1.17
CHCHD3-201ENST00000262570 NBPF4Q96M43 638 aa22.35■■□□□ 1.17
CHCHD3-201ENST00000262570 EYA1Q99502 592 aa22.34■■□□□ 1.17
CHCHD3-201ENST00000262570 USP35Q9P2H5 1018 aa22.34■■□□□ 1.17
CHCHD3-201ENST00000262570 TCP11L2Q8N4U5 519 aa22.32■■□□□ 1.16
CHCHD3-201ENST00000262570 THRAP3Q9Y2W1 955 aaKnown RBP22.32■■□□□ 1.16
CHCHD3-201ENST00000262570 RBM6P78332 1123 aaKnown RBP22.31■■□□□ 1.16
CHCHD3-201ENST00000262570 FAM208AQ9UK61 1670 aaKnown RBP22.31■■□□□ 1.16
CHCHD3-201ENST00000262570 IGSF1Q8N6C5 1336 aa22.3■■□□□ 1.16
CHCHD3-201ENST00000262570 GLI3P10071 1580 aa22.29■■□□□ 1.16
CHCHD3-201ENST00000262570 BARGINQ6ZT62 677 aa22.29■■□□□ 1.16
CHCHD3-201ENST00000262570 NCAPD2Q15021 1401 aa22.29■■□□□ 1.16
CHCHD3-201ENST00000262570 RXRBP28702 533 aa22.29■■□□□ 1.16
CHCHD3-201ENST00000262570 USHBP1Q8N6Y0 703 aa22.29■■□□□ 1.16
CHCHD3-201ENST00000262570 NUDCQ9Y266 331 aa22.29■■□□□ 1.16
CHCHD3-201ENST00000262570 ONECUT3O60422 494 aaPredicted RBP22.28■■□□□ 1.16
CHCHD3-201ENST00000262570 RGPD2P0DJD1 1756 aa22.27■■□□□ 1.16
CHCHD3-201ENST00000262570 CCDC184Q52MB2 194 aa22.27■■□□□ 1.16
CHCHD3-201ENST00000262570 FAM98CQ17RN3 349 aaKnown RBP22.26■■□□□ 1.15
CHCHD3-201ENST00000262570 U2SURPO15042 1029 aaKnown RBP22.25■■□□□ 1.15
CHCHD3-201ENST00000262570 RGPD1P0DJD0 1748 aa22.25■■□□□ 1.15
CHCHD3-201ENST00000262570 KDRP35968 1356 aa22.24■■□□□ 1.15
CHCHD3-201ENST00000262570 IL2RBP14784 551 aa22.24■■□□□ 1.15
CHCHD3-201ENST00000262570 SULT6B1Q6IMI4 303 aa22.24■■□□□ 1.15
CHCHD3-201ENST00000262570 AEBP1Q8IUX7 1158 aa22.24■■□□□ 1.15
CHCHD3-201ENST00000262570 MIER1Q8N108 512 aa22.24■■□□□ 1.15
CHCHD3-201ENST00000262570 CDCA7Q9BWT1 371 aaPredicted RBP22.24■■□□□ 1.15
CHCHD3-201ENST00000262570 DISP2A7MBM2 1401 aa22.24■■□□□ 1.15
CHCHD3-201ENST00000262570 MRS2Q9HD23 443 aa22.22■■□□□ 1.15
CHCHD3-201ENST00000262570 HMOX1P09601 288 aa22.21■■□□□ 1.15
CHCHD3-201ENST00000262570 U2AF1L5P0DN76 240 aaPredicted RBP22.21■■□□□ 1.15
CHCHD3-201ENST00000262570 U2AF1Q01081 240 aaKnown RBP eCLIP22.21■■□□□ 1.15
CHCHD3-201ENST00000262570 RAPGEF4Q8WZA2 1011 aa22.21■■□□□ 1.15
CHCHD3-201ENST00000262570 CCER2I3L3R5 266 aa22.2■■□□□ 1.14
CHCHD3-201ENST00000262570 SEPT12Q8IYM1 358 aa22.2■■□□□ 1.14
CHCHD3-201ENST00000262570 MEGF6O75095 1541 aa22.19■■□□□ 1.14
CHCHD3-201ENST00000262570 TATP17735 454 aaPredicted RBP22.19■■□□□ 1.14
CHCHD3-201ENST00000262570 THSD7AQ9UPZ6 1657 aa22.18■■□□□ 1.14
CHCHD3-201ENST00000262570 A0A0G2JS52 829 aa22.17■■□□□ 1.14
CHCHD3-201ENST00000262570 FCHSD2O94868 740 aa22.17■■□□□ 1.14
CHCHD3-201ENST00000262570 MYT1Q01538 1121 aa22.17■■□□□ 1.14
CHCHD3-201ENST00000262570 PNISRQ8TF01 805 aaKnown RBP22.17■■□□□ 1.14
CHCHD3-201ENST00000262570 RSPH6AQ9H0K4 717 aa22.17■■□□□ 1.14
CHCHD3-201ENST00000262570 OVOS2A0A0G2JMS6 1433 aa22.17■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms