RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 TSACCQ96A04 125 aaPredicted RBP17.11■□□□□ 0.33
VPS29-204ENST00000548259 WRAP53Q9BUR4 548 aaKnown RBP17.11■□□□□ 0.33
VPS29-204ENST00000548259 MAGEH1Q9H213 219 aa17.11■□□□□ 0.33
VPS29-204ENST00000548259 MBNL1Q9NR56 388 aaKnown RBP17.11■□□□□ 0.33
VPS29-204ENST00000548259 ANKMY1Q9P2S6 941 aa17.11■□□□□ 0.33
VPS29-204ENST00000548259 COL12A1Q99715 3063 aa17.1■□□□□ 0.33
VPS29-204ENST00000548259 STMND1H3BQB6 276 aa17.1■□□□□ 0.33
VPS29-204ENST00000548259 I6L893 689 aaPredicted RBP17.1■□□□□ 0.33
VPS29-204ENST00000548259 CASC3O15234 703 aaKnown RBP17.1■□□□□ 0.33
VPS29-204ENST00000548259 RAMP2O60895 175 aa17.1■□□□□ 0.33
VPS29-204ENST00000548259 ITIH1P19827 911 aa17.1■□□□□ 0.33
VPS29-204ENST00000548259 ZFP36L1Q07352 338 aaKnown RBP17.1■□□□□ 0.33
VPS29-204ENST00000548259 UBAP2LQ14157 1087 aaKnown RBP17.1■□□□□ 0.33
VPS29-204ENST00000548259 IRF4Q15306 451 aa17.1■□□□□ 0.33
VPS29-204ENST00000548259 ALG11Q2TAA5 492 aa17.1■□□□□ 0.33
VPS29-204ENST00000548259 PHF19Q5T6S3 580 aa17.1■□□□□ 0.33
VPS29-204ENST00000548259 BORAQ6PGQ7 559 aa17.1■□□□□ 0.33
VPS29-204ENST00000548259 FAM131BQ86XD5 332 aa17.1■□□□□ 0.33
VPS29-204ENST00000548259 ZFAND4Q86XD8 727 aa17.1■□□□□ 0.33
VPS29-204ENST00000548259 ZNF354CQ86Y25 554 aa17.1■□□□□ 0.33
VPS29-204ENST00000548259 LURAP1LQ8IV03 231 aa17.1■□□□□ 0.33
VPS29-204ENST00000548259 ELOA2Q8IYF1 753 aaPredicted RBP17.1■□□□□ 0.33
VPS29-204ENST00000548259 USP7Q93009 1102 aa17.1■□□□□ 0.33
VPS29-204ENST00000548259 DKK3Q9UBP4 350 aa17.1■□□□□ 0.33
VPS29-204ENST00000548259 ZNF212Q9UDV6 495 aa17.1■□□□□ 0.33
VPS29-204ENST00000548259 PNMA8BQ9ULN7 279 aaPredicted RBP17.1■□□□□ 0.33
VPS29-204ENST00000548259 RP1P56715 2156 aa17.1■□□□□ 0.33
VPS29-204ENST00000548259 GTPBP10A4D1E9 387 aaKnown RBP17.09■□□□□ 0.33
VPS29-204ENST00000548259 PPP1R3GB7ZBB8 358 aa17.09■□□□□ 0.33
VPS29-204ENST00000548259 RHOQP17081 205 aa17.09■□□□□ 0.33
VPS29-204ENST00000548259 SLC9A1P19634 815 aa17.09■□□□□ 0.33
VPS29-204ENST00000548259 KELP23276 732 aa17.09■□□□□ 0.33
VPS29-204ENST00000548259 ACVRL1P37023 503 aa17.09■□□□□ 0.33
VPS29-204ENST00000548259 STX17P56962 302 aa17.09■□□□□ 0.33
VPS29-204ENST00000548259 SRSF6Q13247 344 aaKnown RBP17.09■□□□□ 0.33
VPS29-204ENST00000548259 TCEA2Q15560 299 aa17.09■□□□□ 0.33
VPS29-204ENST00000548259 MAP9Q49MG5 647 aa17.09■□□□□ 0.33
VPS29-204ENST00000548259 CERCAMQ5T4B2 595 aa17.09■□□□□ 0.33
VPS29-204ENST00000548259 CFAP58Q5T655 872 aa17.09■□□□□ 0.33
VPS29-204ENST00000548259 ERAP2Q6P179 960 aa17.09■□□□□ 0.33
VPS29-204ENST00000548259 TAF8Q7Z7C8 310 aa17.09■□□□□ 0.33
VPS29-204ENST00000548259 DTX1Q86Y01 620 aa17.09■□□□□ 0.33
VPS29-204ENST00000548259 FAM46DQ8NEK8 389 aa17.09■□□□□ 0.33
VPS29-204ENST00000548259 GPR156Q8NFN8 814 aa17.09■□□□□ 0.33
VPS29-204ENST00000548259 WDR92Q96MX6 357 aa17.09■□□□□ 0.33
VPS29-204ENST00000548259 NCAPGQ9BPX3 1015 aa17.09■□□□□ 0.33
VPS29-204ENST00000548259 APOOQ9BUR5 198 aa17.09■□□□□ 0.33
VPS29-204ENST00000548259 TTYH3Q9C0H2 523 aa17.09■□□□□ 0.33
VPS29-204ENST00000548259 TMPRSS4Q9NRS4 437 aa17.09■□□□□ 0.33
VPS29-204ENST00000548259 OR12D3Q9UGF7 316 aa17.09■□□□□ 0.33
VPS29-204ENST00000548259 DNAI1Q9UI46 699 aa17.09■□□□□ 0.33
VPS29-204ENST00000548259 RNF215Q9Y6U7 377 aa17.09■□□□□ 0.33
VPS29-204ENST00000548259 COL27A1Q8IZC6 1860 aaPredicted RBP17.08■□□□□ 0.33
VPS29-204ENST00000548259 IQCJ-SCHIP1C9J366 451 aaPredicted RBP17.08■□□□□ 0.32
VPS29-204ENST00000548259 BUB1O43683 1085 aa17.08■□□□□ 0.32
VPS29-204ENST00000548259 CD160O95971 181 aa17.08■□□□□ 0.32
VPS29-204ENST00000548259 GP1BBP13224 206 aa17.08■□□□□ 0.32
VPS29-204ENST00000548259 GABRB2P47870 512 aa17.08■□□□□ 0.32
VPS29-204ENST00000548259 GRM3Q14832 879 aa17.08■□□□□ 0.32
VPS29-204ENST00000548259 TMEM52BQ4KMG9 183 aa17.08■□□□□ 0.32
VPS29-204ENST00000548259 LRRC73Q5JTD7 316 aa17.08■□□□□ 0.32
VPS29-204ENST00000548259 SPRED1Q7Z699 444 aa17.08■□□□□ 0.32
VPS29-204ENST00000548259 PIM3Q86V86 326 aa17.08■□□□□ 0.32
VPS29-204ENST00000548259 SLC47A2Q86VL8 602 aa17.08■□□□□ 0.32
VPS29-204ENST00000548259 CCDC112Q8NEF3 446 aa17.08■□□□□ 0.32
VPS29-204ENST00000548259 ZNF564Q8TBZ8 553 aaPredicted RBP17.08■□□□□ 0.32
VPS29-204ENST00000548259 KIAA1524Q8TCG1 905 aa17.08■□□□□ 0.32
VPS29-204ENST00000548259 HCAR2Q8TDS4 363 aa17.08■□□□□ 0.32
VPS29-204ENST00000548259 RBM15Q96T37 977 aaKnown RBP eCLIP17.08■□□□□ 0.32
VPS29-204ENST00000548259 LRIT1Q9P2V4 623 aa17.08■□□□□ 0.32
VPS29-204ENST00000548259 TUBD1Q9UJT1 453 aa17.08■□□□□ 0.32
VPS29-204ENST00000548259 ACTL7AQ9Y615 435 aa17.08■□□□□ 0.32
VPS29-204ENST00000548259 DGKBQ9Y6T7 804 aa17.08■□□□□ 0.32
VPS29-204ENST00000548259 CACNB4O00305 520 aaPredicted RBP17.07■□□□□ 0.32
VPS29-204ENST00000548259 NUDT21O43809 227 aaKnown RBP17.07■□□□□ 0.32
VPS29-204ENST00000548259 TIMP2P16035 220 aa17.07■□□□□ 0.32
VPS29-204ENST00000548259 RHOAP61586 193 aa17.07■□□□□ 0.32
VPS29-204ENST00000548259 CYP4F2P78329 520 aa17.07■□□□□ 0.32
VPS29-204ENST00000548259 NRG1Q02297 640 aaPredicted RBP17.07■□□□□ 0.32
VPS29-204ENST00000548259 BIRC2Q13490 618 aa17.07■□□□□ 0.32
VPS29-204ENST00000548259 MTM1Q13496 603 aa17.07■□□□□ 0.32
VPS29-204ENST00000548259 INPP5AQ14642 412 aa17.07■□□□□ 0.32
VPS29-204ENST00000548259 CLPPQ16740 277 aaPredicted RBP17.07■□□□□ 0.32
VPS29-204ENST00000548259 WSCD2Q2TBF2 565 aa17.07■□□□□ 0.32
VPS29-204ENST00000548259 C14orf28Q4W4Y0 310 aa17.07■□□□□ 0.32
VPS29-204ENST00000548259 ATXN7L2Q5T6C5 722 aaPredicted RBP17.07■□□□□ 0.32
VPS29-204ENST00000548259 OGFOD3Q6PK18 319 aa17.07■□□□□ 0.32
VPS29-204ENST00000548259 ARCQ7LC44 396 aa17.07■□□□□ 0.32
VPS29-204ENST00000548259 GPBAR1Q8TDU6 330 aa17.07■□□□□ 0.32
VPS29-204ENST00000548259 CATSPER2Q96P56 530 aa17.07■□□□□ 0.32
VPS29-204ENST00000548259 DPEP2Q9H4A9 486 aa17.07■□□□□ 0.32
VPS29-204ENST00000548259 PLCB1Q9NQ66 1216 aa17.07■□□□□ 0.32
VPS29-204ENST00000548259 TMEM248Q9NWD8 314 aa17.07■□□□□ 0.32
VPS29-204ENST00000548259 FOXJ2Q9P0K8 574 aa17.07■□□□□ 0.32
VPS29-204ENST00000548259 MFHAS1Q9Y4C4 1052 aa17.07■□□□□ 0.32
VPS29-204ENST00000548259 KIF26BQ2KJY2 2108 aa17.06■□□□□ 0.32
VPS29-204ENST00000548259 C9orf172C9J069 976 aa17.06■□□□□ 0.32
VPS29-204ENST00000548259 GOLGA8SH3BPF8 625 aa17.06■□□□□ 0.32
VPS29-204ENST00000548259 AGRPO00253 132 aa17.06■□□□□ 0.32
VPS29-204ENST00000548259 KDELR3O43731 214 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms