RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 QKIQ96PU8 341 aaKnown RBP eCLIP19.5■□□□□ 0.712e-10■■■■□ 22.6
USP48-201ENST00000308271 STMN3Q9NZ72 180 aa19.5■□□□□ 0.71
USP48-201ENST00000308271 TBKBP1A7MCY6 615 aa19.5■□□□□ 0.71
USP48-201ENST00000308271 SERPINF2P08697 491 aa19.5■□□□□ 0.71
USP48-201ENST00000308271 PSMD5Q16401 504 aa19.5■□□□□ 0.71
USP48-201ENST00000308271 LCLAT1Q6UWP7 414 aa19.5■□□□□ 0.71
USP48-201ENST00000308271 SKA1Q96BD8 255 aa19.5■□□□□ 0.71
USP48-201ENST00000308271 HGH1Q9BTY7 390 aa19.5■□□□□ 0.71
USP48-201ENST00000308271 CLPBQ9H078 707 aa19.5■□□□□ 0.71
USP48-201ENST00000308271 TKTL2Q9H0I9 626 aa19.5■□□□□ 0.71
USP48-201ENST00000308271 OR12D3Q9UGF7 316 aa19.5■□□□□ 0.71
USP48-201ENST00000308271 TRAF6Q9Y4K3 522 aa19.5■□□□□ 0.71
USP48-201ENST00000308271 MDM4O15151 490 aa19.5■□□□□ 0.71
USP48-201ENST00000308271 KRT6AP02538 564 aa19.5■□□□□ 0.71
USP48-201ENST00000308271 KRT6BP04259 564 aa19.5■□□□□ 0.71
USP48-201ENST00000308271 ANXA6P08133 673 aa19.5■□□□□ 0.71
USP48-201ENST00000308271 MATKP42679 507 aa19.5■□□□□ 0.71
USP48-201ENST00000308271 KRT6CP48668 564 aa19.5■□□□□ 0.71
USP48-201ENST00000308271 GMPSP49915 693 aaPredicted RBP19.5■□□□□ 0.71
USP48-201ENST00000308271 TJAP1Q5JTD0 557 aa19.5■□□□□ 0.71
USP48-201ENST00000308271 ERI1Q8IV48 349 aaKnown RBP19.5■□□□□ 0.71
USP48-201ENST00000308271 PDPRQ8NCN5 879 aa19.5■□□□□ 0.71
USP48-201ENST00000308271 FBXO30Q8TB52 745 aa19.5■□□□□ 0.71
USP48-201ENST00000308271 SPATA31A6Q5VVP1 1343 aa19.5■□□□□ 0.71
USP48-201ENST00000308271 B3GAT3O94766 335 aa19.49■□□□□ 0.71
USP48-201ENST00000308271 TRMT10BQ6PF06 316 aaKnown RBP19.49■□□□□ 0.71
USP48-201ENST00000308271 STRADAQ7RTN6 431 aa19.49■□□□□ 0.71
USP48-201ENST00000308271 CYP2C18P33260 490 aa19.49■□□□□ 0.71
USP48-201ENST00000308271 HARS2P49590 506 aaKnown RBP19.49■□□□□ 0.71
USP48-201ENST00000308271 DLG1Q12959 904 aa19.49■□□□□ 0.71
USP48-201ENST00000308271 RALGDSQ12967 914 aa19.49■□□□□ 0.71
USP48-201ENST00000308271 ZYG11AQ6WRX3 759 aa19.49■□□□□ 0.71
USP48-201ENST00000308271 CUZD1Q86UP6 607 aa19.49■□□□□ 0.71
USP48-201ENST00000308271 GLIS1Q8NBF1 620 aa19.49■□□□□ 0.71
USP48-201ENST00000308271 DRAXINQ8NBI3 349 aaPredicted RBP19.49■□□□□ 0.71
USP48-201ENST00000308271 RHOBTB2Q9BYZ6 727 aa19.49■□□□□ 0.71
USP48-201ENST00000308271 ULBP1Q9BZM6 244 aa19.49■□□□□ 0.71
USP48-201ENST00000308271 SENP6Q9GZR1 1112 aaPredicted RBP19.49■□□□□ 0.71
USP48-201ENST00000308271 AAASQ9NRG9 546 aa19.49■□□□□ 0.71
USP48-201ENST00000308271 RGPD1P0DJD0 1748 aa19.49■□□□□ 0.71
USP48-201ENST00000308271 KDM3BQ7LBC6 1761 aa19.49■□□□□ 0.71
USP48-201ENST00000308271 SPATA31C2B4DYI2 1134 aa19.49■□□□□ 0.71
USP48-201ENST00000308271 DLDP09622 509 aaKnown RBP19.49■□□□□ 0.71
USP48-201ENST00000308271 CNTN2Q02246 1040 aa19.49■□□□□ 0.71
USP48-201ENST00000308271 CTBP1Q13363 440 aa19.49■□□□□ 0.71
USP48-201ENST00000308271 PGS1Q32NB8 556 aa19.49■□□□□ 0.71
USP48-201ENST00000308271 KLHDC10Q6PID8 442 aa19.49■□□□□ 0.71
USP48-201ENST00000308271 POTEHQ6S545 545 aa19.49■□□□□ 0.71
USP48-201ENST00000308271 NANOGNBQ7Z5D8 188 aa19.49■□□□□ 0.71
USP48-201ENST00000308271 SYTL1Q8IYJ3 562 aa19.49■□□□□ 0.71
USP48-201ENST00000308271 FAM45AQ8TCE6 357 aa19.49■□□□□ 0.71
USP48-201ENST00000308271 BORCS6Q96GS4 357 aa19.49■□□□□ 0.71
USP48-201ENST00000308271 CRYL1Q9Y2S2 319 aa19.49■□□□□ 0.71
USP48-201ENST00000308271 MED1Q15648 1581 aaPredicted RBP19.49■□□□□ 0.71
USP48-201ENST00000308271 IDO1P14902 403 aa19.49■□□□□ 0.71
USP48-201ENST00000308271 TUBP50607 506 aa19.49■□□□□ 0.71
USP48-201ENST00000308271 SPESP1Q6UW49 350 aa19.49■□□□□ 0.71
USP48-201ENST00000308271 GTF3C2Q8WUA4 911 aaPredicted RBP19.49■□□□□ 0.71
USP48-201ENST00000308271 ITFG2Q969R8 447 aa19.49■□□□□ 0.71
USP48-201ENST00000308271 SEMA4BQ9NPR2 832 aaPredicted RBP19.49■□□□□ 0.71
USP48-201ENST00000308271 KCNU1A8MYU2 1149 aa19.48■□□□□ 0.71
USP48-201ENST00000308271 PRKG2Q13237 762 aa19.48■□□□□ 0.71
USP48-201ENST00000308271 DNAJC14Q6Y2X3 702 aaPredicted RBP19.48■□□□□ 0.71
USP48-201ENST00000308271 LUZP2Q86TE4 346 aa19.48■□□□□ 0.71
USP48-201ENST00000308271 CAPSLQ8WWF8 208 aa19.48■□□□□ 0.71
USP48-201ENST00000308271 PLEKHA8Q96JA3 519 aa19.48■□□□□ 0.71
USP48-201ENST00000308271 ZFYVE28Q9HCC9 887 aa19.48■□□□□ 0.71
USP48-201ENST00000308271 INVSQ9Y283 1065 aa19.48■□□□□ 0.71
USP48-201ENST00000308271 SLC15A5A6NIM6 579 aa19.48■□□□□ 0.71
USP48-201ENST00000308271 H3BRB1 525 aa19.48■□□□□ 0.71
USP48-201ENST00000308271 AZIN1O14977 448 aa19.48■□□□□ 0.71
USP48-201ENST00000308271 GNAZP19086 355 aa19.48■□□□□ 0.71
USP48-201ENST00000308271 FSCN1Q16658 493 aaKnown RBP19.48■□□□□ 0.71
USP48-201ENST00000308271 SHROOM1Q2M3G4 852 aaPredicted RBP19.48■□□□□ 0.71
USP48-201ENST00000308271 RFX4Q33E94 735 aa19.48■□□□□ 0.71
USP48-201ENST00000308271 SPDYE7PQ495Y7 208 aa19.48■□□□□ 0.71
USP48-201ENST00000308271 PIGZQ86VD9 579 aa19.48■□□□□ 0.71
USP48-201ENST00000308271 HM13Q8TCT9 377 aa19.48■□□□□ 0.71
USP48-201ENST00000308271 FOPNLQ96NB1 174 aa19.48■□□□□ 0.71
USP48-201ENST00000308271 TUT1Q9H6E5 874 aaKnown RBP19.48■□□□□ 0.71
USP48-201ENST00000308271 PREBQ9HCU5 417 aa19.48■□□□□ 0.71
USP48-201ENST00000308271 DNAAF2Q9NVR5 837 aaKnown RBP19.48■□□□□ 0.71
USP48-201ENST00000308271 TRNAU1APQ9NX07 287 aaKnown RBP19.48■□□□□ 0.71
USP48-201ENST00000308271 A6NHS1 94 aa19.48■□□□□ 0.71
USP48-201ENST00000308271 RAD51BO15315 384 aa19.48■□□□□ 0.71
USP48-201ENST00000308271 TIMM50Q3ZCQ8 353 aa19.48■□□□□ 0.71
USP48-201ENST00000308271 CBR4Q8N4T8 237 aa19.48■□□□□ 0.71
USP48-201ENST00000308271 ACTR8Q9H981 624 aa19.48■□□□□ 0.71
USP48-201ENST00000308271 BTBD3Q9Y2F9 522 aa19.48■□□□□ 0.71
USP48-201ENST00000308271 CILPO75339 1184 aa19.47■□□□□ 0.71
USP48-201ENST00000308271 POLD2P49005 469 aa19.47■□□□□ 0.71
USP48-201ENST00000308271 POC5Q8NA72 575 aa19.47■□□□□ 0.71
USP48-201ENST00000308271 LRTOMTQ8WZ04 291 aa19.47■□□□□ 0.71
USP48-201ENST00000308271 TFAP2BQ92481 460 aa19.47■□□□□ 0.71
USP48-201ENST00000308271 SPATC1LQ9H0A9 340 aa19.47■□□□□ 0.71
USP48-201ENST00000308271 ELOVL6Q9H5J4 265 aa19.47■□□□□ 0.71
USP48-201ENST00000308271 BTN3A1O00481 513 aa19.47■□□□□ 0.71
USP48-201ENST00000308271 KCNH1O95259 989 aa19.47■□□□□ 0.71
USP48-201ENST00000308271 OAS1P00973 400 aaKnown RBP19.47■□□□□ 0.71
USP48-201ENST00000308271 PKN3Q6P5Z2 889 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms