RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 RAP1GAP2Q684P5 730 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 MARK2Q7KZI7 788 aaKnown RBP17.16■□□□□ 0.34
LDLR-206ENST00000557958 KLHDC8BQ8IXV7 354 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 GPR65Q8IYL9 337 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 LRRC34Q8IZ02 419 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 ZSCAN18Q8TBC5 510 aaPredicted RBP17.16■□□□□ 0.34
LDLR-206ENST00000557958 DENND1AQ8TEH3 1009 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 ARNTL2Q8WYA1 636 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 GORASP1Q9BQQ3 440 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 MLPHQ9BV36 600 aaPredicted RBP17.16■□□□□ 0.34
LDLR-206ENST00000557958 EMILIN2Q9BXX0 1053 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 IQCGQ9H095 443 aaKnown RBP17.16■□□□□ 0.34
LDLR-206ENST00000557958 GLOD4Q9HC38 313 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 MLXIPLQ9NP71 852 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 TLR9Q9NR96 1032 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 TXNDC16Q9P2K2 825 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 DRGXA6NNA5 263 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 TCP11X1B4DZS4 312 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 F5H5T6 163 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 TGM5O43548 720 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 FAM155BO75949 473 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 ASMTLO95671 621 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 RPA3P35244 121 aaPredicted RBP17.16■□□□□ 0.34
LDLR-206ENST00000557958 DNAJC3Q13217 504 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 HNRNPDQ14103 355 aaKnown RBP17.16■□□□□ 0.34
LDLR-206ENST00000557958 PARP15Q460N3 678 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 FBXL22Q6P050 247 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 ARHGAP36Q6ZRI8 547 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 TFAP2DQ7Z6R9 452 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 BANPQ8N9N5 519 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 USP33Q8TEY7 942 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 PPM1EQ8WY54 764 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 PLD4Q96BZ4 506 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 TRMT2BQ96GJ1 504 aaKnown RBP17.16■□□□□ 0.34
LDLR-206ENST00000557958 APOPT1Q96IL0 206 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 SEC16BQ96JE7 1060 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 CABS1Q96KC9 395 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 MYRFLQ96LU7 910 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 KLHL5Q96PQ7 755 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 RXFP1Q9HBX9 757 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 HAUS2Q9NVX0 235 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 RBM22Q9NW64 420 aaKnown RBP eCLIP17.16■□□□□ 0.343e-8■■■■□ 25.7
LDLR-206ENST00000557958 UXTQ9UBK9 157 aaPredicted RBP17.16■□□□□ 0.34
LDLR-206ENST00000557958 YIPF1Q9Y548 306 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 RPS6KL1Q9Y6S9 549 aa17.16■□□□□ 0.34
LDLR-206ENST00000557958 TRIM49D1C9J1S8 452 aa17.15■□□□□ 0.34
LDLR-206ENST00000557958 USP1O94782 785 aa17.15■□□□□ 0.34
LDLR-206ENST00000557958 ADH1AP07327 375 aa17.15■□□□□ 0.34
LDLR-206ENST00000557958 IRS1P35568 1242 aa17.15■□□□□ 0.34
LDLR-206ENST00000557958 YBEYP58557 167 aaPredicted RBP17.15■□□□□ 0.34
LDLR-206ENST00000557958 CRADDP78560 199 aa17.15■□□□□ 0.34
LDLR-206ENST00000557958 MGAT5Q09328 741 aa17.15■□□□□ 0.34
LDLR-206ENST00000557958 ARTNQ5T4W7 220 aa17.15■□□□□ 0.34
LDLR-206ENST00000557958 TRMT10BQ6PF06 316 aaKnown RBP17.15■□□□□ 0.34
LDLR-206ENST00000557958 CNTD1Q8N815 330 aa17.15■□□□□ 0.34
LDLR-206ENST00000557958 CCDC197Q8NCU1 140 aa17.15■□□□□ 0.34
LDLR-206ENST00000557958 NKX2-4Q9H2Z4 354 aa17.15■□□□□ 0.34
LDLR-206ENST00000557958 SP110Q9HB58 689 aa17.15■□□□□ 0.34
LDLR-206ENST00000557958 NDFIP2Q9NV92 336 aa17.15■□□□□ 0.34
LDLR-206ENST00000557958 ZFATQ9P243 1243 aa17.15■□□□□ 0.34
LDLR-206ENST00000557958 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.14■□□□□ 0.33
LDLR-206ENST00000557958 FAM237BA0A1B0GVD1 139 aa17.14■□□□□ 0.33
LDLR-206ENST00000557958 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.14■□□□□ 0.33
LDLR-206ENST00000557958 ZNF840PA6NDX5 716 aa17.14■□□□□ 0.33
LDLR-206ENST00000557958 CXorf49A8MYA2 514 aaPredicted RBP17.14■□□□□ 0.33
LDLR-206ENST00000557958 RAMP2O60895 175 aa17.14■□□□□ 0.33
LDLR-206ENST00000557958 SLC18A2Q05940 514 aa17.14■□□□□ 0.33
LDLR-206ENST00000557958 GPM6BQ13491 265 aa17.14■□□□□ 0.33
LDLR-206ENST00000557958 QPCTQ16769 361 aa17.14■□□□□ 0.33
LDLR-206ENST00000557958 ARMC3Q5W041 872 aa17.14■□□□□ 0.33
LDLR-206ENST00000557958 RGS9BPQ6ZS82 235 aa17.14■□□□□ 0.33
LDLR-206ENST00000557958 ZNF354CQ86Y25 554 aa17.14■□□□□ 0.33
LDLR-206ENST00000557958 MRPL43Q8N983 215 aaKnown RBP17.14■□□□□ 0.33
LDLR-206ENST00000557958 SERBP1Q8NC51 408 aaKnown RBP eCLIP17.14■□□□□ 0.33
LDLR-206ENST00000557958 GRAMD1AQ96CP6 724 aa17.14■□□□□ 0.33
LDLR-206ENST00000557958 TBL1YQ9BQ87 522 aa17.14■□□□□ 0.33
LDLR-206ENST00000557958 FSD1LQ9BXM9 530 aa17.14■□□□□ 0.33
LDLR-206ENST00000557958 PBX4Q9BYU1 374 aa17.14■□□□□ 0.33
LDLR-206ENST00000557958 PIH1D1Q9NWS0 290 aaKnown RBP17.14■□□□□ 0.33
LDLR-206ENST00000557958 LZTS1Q9Y250 596 aa17.14■□□□□ 0.33
LDLR-206ENST00000557958 GREB1Q4ZG55 1949 aa17.14■□□□□ 0.33
LDLR-206ENST00000557958 C2orf71A6NGG8 1288 aa17.14■□□□□ 0.33
LDLR-206ENST00000557958 USP12O75317 370 aa17.14■□□□□ 0.33
LDLR-206ENST00000557958 TACR2P21452 398 aa17.14■□□□□ 0.33
LDLR-206ENST00000557958 WDR4P57081 412 aaKnown RBP17.14■□□□□ 0.33
LDLR-206ENST00000557958 NIPAL4Q0D2K0 466 aa17.14■□□□□ 0.33
LDLR-206ENST00000557958 PLD1Q13393 1074 aa17.14■□□□□ 0.33
LDLR-206ENST00000557958 PDK4Q16654 411 aa17.14■□□□□ 0.33
LDLR-206ENST00000557958 RABGAP1LQ5R372 815 aa17.14■□□□□ 0.33
LDLR-206ENST00000557958 YTHDF3Q7Z739 585 aaKnown RBP17.14■□□□□ 0.33
LDLR-206ENST00000557958 RASSF3Q86WH2 238 aa17.14■□□□□ 0.33
LDLR-206ENST00000557958 LRRC8CQ8TDW0 803 aa17.14■□□□□ 0.33
LDLR-206ENST00000557958 CERS2Q96G23 380 aa17.14■□□□□ 0.33
LDLR-206ENST00000557958 GDF15Q99988 308 aa17.14■□□□□ 0.33
LDLR-206ENST00000557958 SMYD2Q9NRG4 433 aa17.14■□□□□ 0.33
LDLR-206ENST00000557958 MSRAQ9UJ68 235 aa17.14■□□□□ 0.33
LDLR-206ENST00000557958 INSL5Q9Y5Q6 135 aa17.14■□□□□ 0.33
LDLR-206ENST00000557958 FAM169AQ9Y6X4 670 aa17.14■□□□□ 0.33
LDLR-206ENST00000557958 MYO18AQ92614 2054 aaKnown RBP17.13■□□□□ 0.33
LDLR-206ENST00000557958 C5orf67F2Z3F1 127 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms