RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 ATPAF2Q8N5M1 289 aa15.31■□□□□ 0.04
NUP54-213ENST00000513352 RPLP0P6Q8NHW5 317 aa15.31■□□□□ 0.04
NUP54-213ENST00000513352 CCDC26Q8TAB7 109 aa15.31■□□□□ 0.04
NUP54-213ENST00000513352 PBXIP1Q96AQ6 731 aa15.31■□□□□ 0.04
NUP54-213ENST00000513352 ALG14Q96F25 216 aa15.31■□□□□ 0.04
NUP54-213ENST00000513352 RPL10LQ96L21 214 aaKnown RBP15.31■□□□□ 0.04
NUP54-213ENST00000513352 WDR24Q96S15 920 aa15.31■□□□□ 0.04
NUP54-213ENST00000513352 LRRC19Q9H756 370 aa15.31■□□□□ 0.04
NUP54-213ENST00000513352 SP110Q9HB58 689 aa15.31■□□□□ 0.04
NUP54-213ENST00000513352 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.31■□□□□ 0.04
NUP54-213ENST00000513352 PLA2G4CQ9UP65 541 aa15.31■□□□□ 0.04
NUP54-213ENST00000513352 OR51B4Q9Y5P0 310 aa15.31■□□□□ 0.04
NUP54-213ENST00000513352 CEP104O60308 925 aa15.3■□□□□ 0.04
NUP54-213ENST00000513352 DLDP09622 509 aaKnown RBP15.3■□□□□ 0.04
NUP54-213ENST00000513352 DEKP35659 375 aaKnown RBP15.3■□□□□ 0.04
NUP54-213ENST00000513352 NNMTP40261 264 aa15.3■□□□□ 0.04
NUP54-213ENST00000513352 STK19P49842 368 aaPredicted RBP15.3■□□□□ 0.04
NUP54-213ENST00000513352 GBE1Q04446 702 aa15.3■□□□□ 0.04
NUP54-213ENST00000513352 SERINC3Q13530 473 aa15.3■□□□□ 0.04
NUP54-213ENST00000513352 ZNF234Q14588 700 aa15.3■□□□□ 0.04
NUP54-213ENST00000513352 E2F5Q15329 346 aa15.3■□□□□ 0.04
NUP54-213ENST00000513352 TAZQ16635 292 aa15.3■□□□□ 0.04
NUP54-213ENST00000513352 CWF19L1Q69YN2 538 aaKnown RBP15.3■□□□□ 0.04
NUP54-213ENST00000513352 SLC9A4Q6AI14 798 aa15.3■□□□□ 0.04
NUP54-213ENST00000513352 SDE2Q6IQ49 451 aa15.3■□□□□ 0.04
NUP54-213ENST00000513352 ARHGAP12Q8IWW6 846 aa15.3■□□□□ 0.04
NUP54-213ENST00000513352 TP53INP2Q8IXH6 220 aa15.3■□□□□ 0.04
NUP54-213ENST00000513352 CHPFQ8IZ52 775 aa15.3■□□□□ 0.04
NUP54-213ENST00000513352 ALLCQ8N6M5 410 aa15.3■□□□□ 0.04
NUP54-213ENST00000513352 PLD5Q8N7P1 536 aa15.3■□□□□ 0.04
NUP54-213ENST00000513352 TTC17Q96AE7 1141 aa15.3■□□□□ 0.04
NUP54-213ENST00000513352 ERLEC1Q96DZ1 483 aa15.3■□□□□ 0.04
NUP54-213ENST00000513352 C16orf45Q96MC5 204 aaPredicted RBP15.3■□□□□ 0.04
NUP54-213ENST00000513352 NAPGQ99747 312 aaPredicted RBP15.3■□□□□ 0.04
NUP54-213ENST00000513352 OSBPL6Q9BZF3 934 aa15.3■□□□□ 0.04
NUP54-213ENST00000513352 KLC2Q9H0B6 622 aa15.3■□□□□ 0.04
NUP54-213ENST00000513352 CARD9Q9H257 536 aa15.3■□□□□ 0.04
NUP54-213ENST00000513352 PRDM16Q9HAZ2 1276 aa15.3■□□□□ 0.04
NUP54-213ENST00000513352 CACNA2D2Q9NY47 1150 aa15.3■□□□□ 0.04
NUP54-213ENST00000513352 ERVW-1Q9UQF0 538 aa15.3■□□□□ 0.04
NUP54-213ENST00000513352 A0A0A0MRY4 1105 aa15.29■□□□□ 0.04
NUP54-213ENST00000513352 CTAGE9A4FU28 777 aa15.29■□□□□ 0.04
NUP54-213ENST00000513352 KDELR3O43731 214 aa15.29■□□□□ 0.04
NUP54-213ENST00000513352 TJP3O95049 919 aa15.29■□□□□ 0.04
NUP54-213ENST00000513352 TGM2P21980 687 aa15.29■□□□□ 0.04
NUP54-213ENST00000513352 PTPN7P35236 360 aa15.29■□□□□ 0.04
NUP54-213ENST00000513352 KIR2DL1P43626 348 aaPredicted RBP15.29■□□□□ 0.04
NUP54-213ENST00000513352 MRPS21P82921 87 aaKnown RBP15.29■□□□□ 0.04
NUP54-213ENST00000513352 ACCSLQ4AC99 568 aa15.29■□□□□ 0.04
NUP54-213ENST00000513352 AFMIDQ63HM1 303 aa15.29■□□□□ 0.04
NUP54-213ENST00000513352 RETSATQ6NUM9 610 aa15.29■□□□□ 0.04
NUP54-213ENST00000513352 SERPINA13PQ6UXR4 307 aa15.29■□□□□ 0.04
NUP54-213ENST00000513352 BBS12Q6ZW61 710 aa15.29■□□□□ 0.04
NUP54-213ENST00000513352 TRMT11Q7Z4G4 463 aaKnown RBP15.29■□□□□ 0.04
NUP54-213ENST00000513352 ADAT2Q7Z6V5 191 aaKnown RBP15.29■□□□□ 0.04
NUP54-213ENST00000513352 ATP11CQ8NB49 1132 aa15.29■□□□□ 0.04
NUP54-213ENST00000513352 TXNDC5Q8NBS9 432 aaKnown RBP15.29■□□□□ 0.04
NUP54-213ENST00000513352 CCNYQ8ND76 341 aa15.29■□□□□ 0.04
NUP54-213ENST00000513352 USP33Q8TEY7 942 aa15.29■□□□□ 0.04
NUP54-213ENST00000513352 P3H4Q92791 437 aa15.29■□□□□ 0.04
NUP54-213ENST00000513352 ACDQ96AP0 544 aa15.29■□□□□ 0.04
NUP54-213ENST00000513352 ACE2Q9BYF1 805 aaPredicted RBP15.29■□□□□ 0.04
NUP54-213ENST00000513352 DTLQ9NZJ0 730 aa15.29■□□□□ 0.04
NUP54-213ENST00000513352 SAE1Q9UBE0 346 aaPredicted RBP15.29■□□□□ 0.04
NUP54-213ENST00000513352 SLC8A2Q9UPR5 921 aa15.29■□□□□ 0.04
NUP54-213ENST00000513352 SRPRAP08240 638 aaKnown RBP15.28■□□□□ 0.04
NUP54-213ENST00000513352 PECAM1P16284 738 aaPredicted RBP15.28■□□□□ 0.04
NUP54-213ENST00000513352 MX2P20592 715 aa15.28■□□□□ 0.04
NUP54-213ENST00000513352 CASQ1P31415 396 aa15.28■□□□□ 0.04
NUP54-213ENST00000513352 GEMIN4P57678 1058 aaKnown RBP15.28■□□□□ 0.04
NUP54-213ENST00000513352 ADCY2Q08462 1091 aa15.28■□□□□ 0.04
NUP54-213ENST00000513352 ARHGAP36Q6ZRI8 547 aa15.28■□□□□ 0.04
NUP54-213ENST00000513352 ZNF687Q8N1G0 1237 aa15.28■□□□□ 0.04
NUP54-213ENST00000513352 SYNPOQ8N3V7 929 aa15.28■□□□□ 0.04
NUP54-213ENST00000513352 ZNF366Q8N895 744 aa15.28■□□□□ 0.04
NUP54-213ENST00000513352 IL17RCQ8NAC3 791 aa15.28■□□□□ 0.04
NUP54-213ENST00000513352 ACOX2Q99424 681 aa15.28■□□□□ 0.04
NUP54-213ENST00000513352 HERPUD2Q9BSE4 406 aa15.28■□□□□ 0.04
NUP54-213ENST00000513352 THAP10Q9P2Z0 257 aaPredicted RBP15.28■□□□□ 0.04
NUP54-213ENST00000513352 UBA2Q9UBT2 640 aaPredicted RBP15.28■□□□□ 0.04
NUP54-213ENST00000513352 IPO11Q9UI26 975 aaKnown RBP15.28■□□□□ 0.04
NUP54-213ENST00000513352 EFR3BQ9Y2G0 817 aa15.28■□□□□ 0.04
NUP54-213ENST00000513352 STARD13Q9Y3M8 1113 aa15.28■□□□□ 0.04
NUP54-213ENST00000513352 ACTL7AQ9Y615 435 aa15.28■□□□□ 0.04
NUP54-213ENST00000513352 STON1Q9Y6Q2 735 aa15.28■□□□□ 0.04
NUP54-213ENST00000513352 ZSCAN5CA6NGD5 496 aaPredicted RBP15.27■□□□□ 0.04
NUP54-213ENST00000513352 H7C0C1 242 aa15.27■□□□□ 0.04
NUP54-213ENST00000513352 J3KR12 359 aa15.27■□□□□ 0.04
NUP54-213ENST00000513352 PPP1R12AO14974 1030 aaPredicted RBP15.27■□□□□ 0.04
NUP54-213ENST00000513352 PI15O43692 258 aa15.27■□□□□ 0.04
NUP54-213ENST00000513352 BNIP3LO60238 219 aa15.27■□□□□ 0.04
NUP54-213ENST00000513352 PRAMEF11O60813 436 aa15.27■□□□□ 0.04
NUP54-213ENST00000513352 NEBLO76041 1014 aa15.27■□□□□ 0.04
NUP54-213ENST00000513352 EPHX1P07099 455 aa15.27■□□□□ 0.04
NUP54-213ENST00000513352 HLA-EP13747 358 aa15.27■□□□□ 0.04
NUP54-213ENST00000513352 HNRNPLP14866 589 aaKnown RBP eCLIP15.27■□□□□ 0.04
NUP54-213ENST00000513352 AOC1P19801 751 aa15.27■□□□□ 0.04
NUP54-213ENST00000513352 PRKCHP24723 683 aa15.27■□□□□ 0.04
NUP54-213ENST00000513352 NTSR1P30989 418 aa15.27■□□□□ 0.04
NUP54-213ENST00000513352 GARSP41250 739 aaKnown RBP15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms