RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 MAMLD1Q13495 774 aa7.97□□□□□ -1.13
NUP54-215ENST00000514313 LARS2Q15031 903 aaKnown RBP7.97□□□□□ -1.13
NUP54-215ENST00000514313 MIIPQ5JXC2 388 aa7.97□□□□□ -1.13
NUP54-215ENST00000514313 TTLL5Q6EMB2 1281 aa7.97□□□□□ -1.13
NUP54-215ENST00000514313 TMEM65Q6PI78 240 aa7.97□□□□□ -1.13
NUP54-215ENST00000514313 SLC30A9Q6PML9 568 aa7.97□□□□□ -1.13
NUP54-215ENST00000514313 SLC29A4Q7RTT9 530 aa7.97□□□□□ -1.13
NUP54-215ENST00000514313 GALNT5Q7Z7M9 940 aa7.97□□□□□ -1.13
NUP54-215ENST00000514313 C1orf131Q8NDD1 294 aaKnown RBP7.97□□□□□ -1.13
NUP54-215ENST00000514313 CAVIN3Q969G5 261 aa7.97□□□□□ -1.13
NUP54-215ENST00000514313 PERPQ96FX8 193 aa7.97□□□□□ -1.13
NUP54-215ENST00000514313 C5orf34Q96MH7 638 aa7.97□□□□□ -1.13
NUP54-215ENST00000514313 FYTTD1Q96QD9 318 aaKnown RBP7.97□□□□□ -1.13
NUP54-215ENST00000514313 PIP5K1AQ99755 562 aa7.97□□□□□ -1.13
NUP54-215ENST00000514313 TRIM2Q9C040 744 aa7.97□□□□□ -1.13
NUP54-215ENST00000514313 CCDC68Q9H2F9 335 aa7.97□□□□□ -1.13
NUP54-215ENST00000514313 MUC13Q9H3R2 512 aa7.97□□□□□ -1.13
NUP54-215ENST00000514313 ANKEF1Q9NU02 776 aa7.97□□□□□ -1.13
NUP54-215ENST00000514313 TMEM248Q9NWD8 314 aa7.97□□□□□ -1.13
NUP54-215ENST00000514313 FOXJ2Q9P0K8 574 aa7.97□□□□□ -1.13
NUP54-215ENST00000514313 EPN1Q9Y6I3 576 aaPredicted RBP7.97□□□□□ -1.13
NUP54-215ENST00000514313 GCOM1H8Y6P7 765 aaPredicted RBP7.96□□□□□ -1.14
NUP54-215ENST00000514313 HBP1O60381 514 aa7.96□□□□□ -1.14
NUP54-215ENST00000514313 CHRM4P08173 479 aa7.96□□□□□ -1.14
NUP54-215ENST00000514313 COX7A2P14406 83 aa7.96□□□□□ -1.14
NUP54-215ENST00000514313 CUL4AQ13619 759 aa7.96□□□□□ -1.14
NUP54-215ENST00000514313 SLC18A3Q16572 532 aa7.96□□□□□ -1.14
NUP54-215ENST00000514313 LSM12Q3MHD2 195 aaKnown RBP7.96□□□□□ -1.14
NUP54-215ENST00000514313 AWAT1Q58HT5 328 aa7.96□□□□□ -1.14
NUP54-215ENST00000514313 ARL13AQ5H913 290 aaPredicted RBP7.96□□□□□ -1.14
NUP54-215ENST00000514313 RASAL3Q86YV0 1011 aa7.96□□□□□ -1.14
NUP54-215ENST00000514313 FAM110DQ8TAY7 271 aaPredicted RBP7.96□□□□□ -1.14
NUP54-215ENST00000514313 CELF1Q92879 486 aaKnown RBP7.96□□□□□ -1.14
NUP54-215ENST00000514313 DAZAP1Q96EP5 407 aaKnown RBP7.96□□□□□ -1.14
NUP54-215ENST00000514313 PDLIM2Q96JY6 352 aa7.96□□□□□ -1.14
NUP54-215ENST00000514313 SLC32A1Q9H598 525 aa7.96□□□□□ -1.14
NUP54-215ENST00000514313 SEPT11Q9NVA2 429 aaKnown RBP7.96□□□□□ -1.14
NUP54-215ENST00000514313 MTPAPQ9NVV4 582 aaKnown RBP eCLIP7.96□□□□□ -1.14
NUP54-215ENST00000514313 ARL15Q9NXU5 204 aa7.96□□□□□ -1.14
NUP54-215ENST00000514313 MPP6Q9NZW5 540 aa7.96□□□□□ -1.14
NUP54-215ENST00000514313 ADD3Q9UEY8 706 aaKnown RBP7.96□□□□□ -1.14
NUP54-215ENST00000514313 TEX13CA0A0J9YWL9 993 aa7.95□□□□□ -1.14
NUP54-215ENST00000514313 A0A1W2PQM1 296 aa7.95□□□□□ -1.14
NUP54-215ENST00000514313 GTPBP1O00178 669 aaKnown RBP7.95□□□□□ -1.14
NUP54-215ENST00000514313 SPARCP09486 303 aa7.95□□□□□ -1.14
NUP54-215ENST00000514313 BSGP35613 385 aa7.95□□□□□ -1.14
NUP54-215ENST00000514313 ARL1P40616 181 aaPredicted RBP7.95□□□□□ -1.14
NUP54-215ENST00000514313 PTPN9P43378 593 aa7.95□□□□□ -1.14
NUP54-215ENST00000514313 OAZ1P54368 228 aa7.95□□□□□ -1.14
NUP54-215ENST00000514313 SEMA3AQ14563 771 aa7.95□□□□□ -1.14
NUP54-215ENST00000514313 KPNB1Q14974 876 aaKnown RBP7.95□□□□□ -1.14
NUP54-215ENST00000514313 FBXO43Q4G163 708 aa7.95□□□□□ -1.14
NUP54-215ENST00000514313 ZNF280DQ6N043 979 aa7.95□□□□□ -1.14
NUP54-215ENST00000514313 TRIM72Q6ZMU5 477 aa7.95□□□□□ -1.14
NUP54-215ENST00000514313 RFX6Q8HWS3 928 aa7.95□□□□□ -1.14
NUP54-215ENST00000514313 SETD9Q8NE22 299 aa7.95□□□□□ -1.14
NUP54-215ENST00000514313 USP6NLQ92738 828 aa7.95□□□□□ -1.14
NUP54-215ENST00000514313 NSUN4Q96CB9 384 aaKnown RBP7.95□□□□□ -1.14
NUP54-215ENST00000514313 KLHL29Q96CT2 875 aa7.95□□□□□ -1.14
NUP54-215ENST00000514313 SAAL1Q96ER3 474 aa7.95□□□□□ -1.14
NUP54-215ENST00000514313 BBC3Q96PG8 261 aaPredicted RBP7.95□□□□□ -1.14
NUP54-215ENST00000514313 MMRN2Q9H8L6 949 aa7.95□□□□□ -1.14
NUP54-215ENST00000514313 CYP4F11Q9HBI6 524 aa7.95□□□□□ -1.14
NUP54-215ENST00000514313 PEMTQ9UBM1 199 aa7.95□□□□□ -1.14
NUP54-215ENST00000514313 TTLL3Q9Y4R7 772 aa7.95□□□□□ -1.14
NUP54-215ENST00000514313 TCRBV5S1A1TA0A578 114 aa7.94□□□□□ -1.14
NUP54-215ENST00000514313 GRID2IPA4D2P6 1211 aa7.94□□□□□ -1.14
NUP54-215ENST00000514313 GCATO75600 419 aa7.94□□□□□ -1.14
NUP54-215ENST00000514313 CCNDBP1O95273 360 aa7.94□□□□□ -1.14
NUP54-215ENST00000514313 IDUAP35475 653 aa7.94□□□□□ -1.14
NUP54-215ENST00000514313 ACTN2P35609 894 aa7.94□□□□□ -1.14
NUP54-215ENST00000514313 RARSP54136 660 aaKnown RBP7.94□□□□□ -1.14
NUP54-215ENST00000514313 ZBTB16Q05516 673 aa7.94□□□□□ -1.14
NUP54-215ENST00000514313 NEXNQ0ZGT2 675 aa7.94□□□□□ -1.14
NUP54-215ENST00000514313 GLE1Q53GS7 698 aaKnown RBP7.94□□□□□ -1.14
NUP54-215ENST00000514313 TMEM81Q6P7N7 255 aa7.94□□□□□ -1.14
NUP54-215ENST00000514313 KLHL24Q6TFL4 600 aa7.94□□□□□ -1.14
NUP54-215ENST00000514313 VSTM1Q6UX27 236 aa7.94□□□□□ -1.14
NUP54-215ENST00000514313 RANBP10Q6VN20 620 aa7.94□□□□□ -1.14
NUP54-215ENST00000514313 KRTAP1-3Q8IUG1 177 aa7.94□□□□□ -1.14
NUP54-215ENST00000514313 VRK3Q8IV63 474 aa7.94□□□□□ -1.14
NUP54-215ENST00000514313 NOC3LQ8WTT2 800 aaKnown RBP7.94□□□□□ -1.14
NUP54-215ENST00000514313 ADAD1Q96M93 576 aaKnown RBP7.94□□□□□ -1.14
NUP54-215ENST00000514313 KLHL15Q96M94 604 aa7.94□□□□□ -1.14
NUP54-215ENST00000514313 ZNF347Q96SE7 839 aa7.94□□□□□ -1.14
NUP54-215ENST00000514313 NUAK2Q9H093 628 aa7.94□□□□□ -1.14
NUP54-215ENST00000514313 RSF1Q96T23 1441 aaPredicted RBP7.94□□□□□ -1.14
NUP54-215ENST00000514313 MGST3O14880 152 aa7.93□□□□□ -1.14
NUP54-215ENST00000514313 CEP104O60308 925 aa7.93□□□□□ -1.14
NUP54-215ENST00000514313 ZNF202O95125 648 aa7.93□□□□□ -1.14
NUP54-215ENST00000514313 RRM1P23921 792 aa7.93□□□□□ -1.14
NUP54-215ENST00000514313 TM4SF1P30408 202 aa7.93□□□□□ -1.14
NUP54-215ENST00000514313 CTCFP49711 727 aaPredicted RBP7.93□□□□□ -1.14
NUP54-215ENST00000514313 CTSWP56202 376 aa7.93□□□□□ -1.14
NUP54-215ENST00000514313 EFEMP1Q12805 493 aa7.93□□□□□ -1.14
NUP54-215ENST00000514313 ANXA2RQ3ZCQ2 193 aa7.93□□□□□ -1.14
NUP54-215ENST00000514313 TMEM63BQ5T3F8 832 aa7.93□□□□□ -1.14
NUP54-215ENST00000514313 DHRS13Q6UX07 377 aa7.93□□□□□ -1.14
NUP54-215ENST00000514313 C17orf99Q6UX52 265 aa7.93□□□□□ -1.14
NUP54-215ENST00000514313 IKBIPQ70UQ0 350 aa7.93□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 136 ms