RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 ACBD5Q5T8D3 534 aaPredicted RBP13.74□□□□□ -0.21
VPS28-210ENST00000529182 RNF219Q5W0B1 726 aaPredicted RBP13.74□□□□□ -0.21
VPS28-210ENST00000529182 ZC3H14Q6PJT7 736 aaKnown RBP13.74□□□□□ -0.21
VPS28-210ENST00000529182 RASSF3Q86WH2 238 aa13.74□□□□□ -0.21
VPS28-210ENST00000529182 CPNE8Q86YQ8 564 aa13.74□□□□□ -0.21
VPS28-210ENST00000529182 CTNNBL1Q8WYA6 563 aaPredicted RBP13.74□□□□□ -0.21
VPS28-210ENST00000529182 TBC1D31Q96DN5 1066 aa13.74□□□□□ -0.21
VPS28-210ENST00000529182 MYO19Q96H55 970 aa13.74□□□□□ -0.21
VPS28-210ENST00000529182 RPL10LQ96L21 214 aaKnown RBP13.74□□□□□ -0.21
VPS28-210ENST00000529182 MRGPRX3Q96LB0 322 aa13.74□□□□□ -0.21
VPS28-210ENST00000529182 FEM1AQ9BSK4 669 aa13.74□□□□□ -0.21
VPS28-210ENST00000529182 SNRNP25Q9BV90 132 aaKnown RBP13.74□□□□□ -0.21
VPS28-210ENST00000529182 MUC3BQ9H195 1237 aa13.74□□□□□ -0.21
VPS28-210ENST00000529182 MTG2Q9H4K7 406 aa13.74□□□□□ -0.21
VPS28-210ENST00000529182 NDFIP2Q9NV92 336 aa13.74□□□□□ -0.21
VPS28-210ENST00000529182 BCCIPQ9P287 314 aaKnown RBP eCLIP13.74□□□□□ -0.21
VPS28-210ENST00000529182 PPARGC1AQ9UBK2 798 aaKnown RBP13.74□□□□□ -0.21
VPS28-210ENST00000529182 EBF1Q9UH73 591 aa13.74□□□□□ -0.21
VPS28-210ENST00000529182 PLA2G4CQ9UP65 541 aa13.74□□□□□ -0.21
VPS28-210ENST00000529182 INVSQ9Y283 1065 aa13.74□□□□□ -0.21
VPS28-210ENST00000529182 OR51B4Q9Y5P0 310 aa13.74□□□□□ -0.21
VPS28-210ENST00000529182 A0A0D9SEW6 157 aa13.73□□□□□ -0.21
VPS28-210ENST00000529182 NPC1O15118 1278 aa13.73□□□□□ -0.21
VPS28-210ENST00000529182 PRPSAP2O60256 369 aa13.73□□□□□ -0.21
VPS28-210ENST00000529182 ALDH1A2O94788 518 aa13.73□□□□□ -0.21
VPS28-210ENST00000529182 TMEM253P0C7T8 217 aa13.73□□□□□ -0.21
VPS28-210ENST00000529182 NDUFV2P19404 249 aa13.73□□□□□ -0.21
VPS28-210ENST00000529182 IL1R2P27930 398 aa13.73□□□□□ -0.21
VPS28-210ENST00000529182 CDC25BP30305 580 aa13.73□□□□□ -0.21
VPS28-210ENST00000529182 OR1E1P30953 314 aa13.73□□□□□ -0.21
VPS28-210ENST00000529182 STK19P49842 368 aaPredicted RBP13.73□□□□□ -0.21
VPS28-210ENST00000529182 PLK1P53350 603 aa13.73□□□□□ -0.21
VPS28-210ENST00000529182 ECT2LQ008S8 904 aa13.73□□□□□ -0.21
VPS28-210ENST00000529182 SLC12A1Q13621 1099 aa13.73□□□□□ -0.21
VPS28-210ENST00000529182 NLRP14Q86W24 1093 aa13.73□□□□□ -0.21
VPS28-210ENST00000529182 PGBD3Q8N328 593 aa13.73□□□□□ -0.21
VPS28-210ENST00000529182 OR7D4Q8NG98 312 aa13.73□□□□□ -0.21
VPS28-210ENST00000529182 FAM122AQ96E09 287 aa13.73□□□□□ -0.21
VPS28-210ENST00000529182 PANX2Q96RD6 677 aa13.73□□□□□ -0.21
VPS28-210ENST00000529182 KCTD15Q96SI1 283 aaPredicted RBP13.73□□□□□ -0.21
VPS28-210ENST00000529182 PSMB7Q99436 277 aa13.73□□□□□ -0.21
VPS28-210ENST00000529182 TMEM245Q9H330 911 aa13.73□□□□□ -0.21
VPS28-210ENST00000529182 DHX35Q9H5Z1 703 aaKnown RBP13.73□□□□□ -0.21
VPS28-210ENST00000529182 OSGEPQ9NPF4 335 aa13.73□□□□□ -0.21
VPS28-210ENST00000529182 IP6K2Q9UHH9 426 aa13.73□□□□□ -0.21
VPS28-210ENST00000529182 SLCO3A1Q9UIG8 710 aa13.73□□□□□ -0.21
VPS28-210ENST00000529182 VPS28Q9UK41 221 aa13.73□□□□□ -0.21
VPS28-210ENST00000529182 AP4E1Q9UPM8 1137 aa13.73□□□□□ -0.21
VPS28-210ENST00000529182 ERVW-1Q9UQF0 538 aa13.73□□□□□ -0.21
VPS28-210ENST00000529182 FANCMQ8IYD8 2048 aa13.73□□□□□ -0.21
VPS28-210ENST00000529182 CCDC163A0A0D9SF12 145 aa13.72□□□□□ -0.21
VPS28-210ENST00000529182 SOWAHDA6NJG2 315 aa13.72□□□□□ -0.21
VPS28-210ENST00000529182 TTC34A8MYJ7 566 aa13.72□□□□□ -0.21
VPS28-210ENST00000529182 MYO1FO00160 1098 aa13.72□□□□□ -0.21
VPS28-210ENST00000529182 DCLK1O15075 740 aa13.72□□□□□ -0.21
VPS28-210ENST00000529182 SYNCRIPO60506 623 aaKnown RBP13.72□□□□□ -0.21
VPS28-210ENST00000529182 SNAP91O60641 907 aa13.72□□□□□ -0.21
VPS28-210ENST00000529182 ASLP04424 464 aa13.72□□□□□ -0.21
VPS28-210ENST00000529182 RHOQP17081 205 aa13.72□□□□□ -0.21
VPS28-210ENST00000529182 GLDCP23378 1020 aa13.72□□□□□ -0.21
VPS28-210ENST00000529182 EPHB2P29323 1055 aa13.72□□□□□ -0.21
VPS28-210ENST00000529182 L1CAMP32004 1257 aa13.72□□□□□ -0.21
VPS28-210ENST00000529182 PLA2G5P39877 138 aa13.72□□□□□ -0.21
VPS28-210ENST00000529182 AIF1P55008 147 aa13.72□□□□□ -0.21
VPS28-210ENST00000529182 OXCT1P55809 520 aa13.72□□□□□ -0.21
VPS28-210ENST00000529182 ST8SIA6P61647 398 aa13.72□□□□□ -0.21
VPS28-210ENST00000529182 SEMA3BQ13214 749 aa13.72□□□□□ -0.21
VPS28-210ENST00000529182 PIGHQ14442 188 aaPredicted RBP13.72□□□□□ -0.21
VPS28-210ENST00000529182 STARD3Q14849 445 aa13.72□□□□□ -0.21
VPS28-210ENST00000529182 LPAL2Q16609 132 aa13.72□□□□□ -0.21
VPS28-210ENST00000529182 SMTNL2Q2TAL5 461 aa13.72□□□□□ -0.21
VPS28-210ENST00000529182 KCNT1Q5JUK3 1230 aa13.72□□□□□ -0.21
VPS28-210ENST00000529182 C6orf118Q5T5N4 469 aa13.72□□□□□ -0.21
VPS28-210ENST00000529182 ERMARDQ5T6L9 678 aa13.72□□□□□ -0.21
VPS28-210ENST00000529182 TXNRD3NBQ6F5E7 133 aa13.72□□□□□ -0.21
VPS28-210ENST00000529182 SETD3Q86TU7 594 aaPredicted RBP13.72□□□□□ -0.21
VPS28-210ENST00000529182 CACUL1Q86Y37 369 aa13.72□□□□□ -0.21
VPS28-210ENST00000529182 FRMD1Q8N878 549 aa13.72□□□□□ -0.21
VPS28-210ENST00000529182 RLN3Q8WXF3 142 aa13.72□□□□□ -0.21
VPS28-210ENST00000529182 EPAS1Q99814 870 aa13.72□□□□□ -0.21
VPS28-210ENST00000529182 MKRN2Q9H000 416 aaKnown RBP13.72□□□□□ -0.21
VPS28-210ENST00000529182 ZWILCHQ9H900 591 aa13.72□□□□□ -0.21
VPS28-210ENST00000529182 CD93Q9NPY3 652 aa13.72□□□□□ -0.21
VPS28-210ENST00000529182 TMEM248Q9NWD8 314 aa13.72□□□□□ -0.21
VPS28-210ENST00000529182 DNAI1Q9UI46 699 aa13.72□□□□□ -0.21
VPS28-210ENST00000529182 USP18Q9UMW8 372 aa13.72□□□□□ -0.21
VPS28-210ENST00000529182 TMEM110-MUSTN1A8MSY1 372 aa13.71□□□□□ -0.21
VPS28-210ENST00000529182 PROB1E7EW31 1015 aa13.71□□□□□ -0.21
VPS28-210ENST00000529182 RPP40O75818 363 aaKnown RBP13.71□□□□□ -0.21
VPS28-210ENST00000529182 FECHP22830 423 aa13.71□□□□□ -0.21
VPS28-210ENST00000529182 PCK1P35558 622 aa13.71□□□□□ -0.21
VPS28-210ENST00000529182 COPAP53621 1224 aa13.71□□□□□ -0.21
VPS28-210ENST00000529182 SLC25A11Q02978 314 aaKnown RBP13.71□□□□□ -0.21
VPS28-210ENST00000529182 ACAP1Q15027 740 aa13.71□□□□□ -0.21
VPS28-210ENST00000529182 E2F5Q15329 346 aa13.71□□□□□ -0.21
VPS28-210ENST00000529182 KIAA1324Q6UXG2 1013 aaKnown RBP13.71□□□□□ -0.21
VPS28-210ENST00000529182 PRR23BQ6ZRT6 265 aa13.71□□□□□ -0.21
VPS28-210ENST00000529182 ASCL5Q7RTU5 278 aa13.71□□□□□ -0.21
VPS28-210ENST00000529182 FAM160A2Q8N612 972 aaPredicted RBP13.71□□□□□ -0.21
VPS28-210ENST00000529182 NIPA2Q8N8Q9 360 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms