RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 EFCAB8A8MWE9 144 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 H0Y858 1186 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 F2RL2O00254 374 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 KRIT1O00522 736 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 BCAT2O15382 392 aaPredicted RBP6.57□□□□□ -1.36
VPS29-210ENST00000552130 TLR2O60603 784 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 GJB1P08034 283 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 SELLP14151 372 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 ICAM3P32942 547 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 CNR2P34972 360 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 MC3RP41968 323 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 CAMLGP49069 296 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 LIG4P49917 911 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 MRPL12P52815 198 aaKnown RBP6.57□□□□□ -1.36
VPS29-210ENST00000552130 EPHA5P54756 1037 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 RPL7AP62424 266 aaKnown RBP6.57□□□□□ -1.36
VPS29-210ENST00000552130 ARF5P84085 180 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 KRT17Q04695 432 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 CETN1Q12798 172 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 CAPSQ13938 189 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 USP39Q53GS9 565 aaKnown RBP6.57□□□□□ -1.36
VPS29-210ENST00000552130 CCDC178Q5BJE1 867 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 BICRALQ6AI39 1079 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 CHST9Q7L1S5 443 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 FAM160B2Q86V87 743 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 TTC9BQ8N6N2 239 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 PCSK9Q8NBP7 692 aaKnown RBP6.57□□□□□ -1.36
VPS29-210ENST00000552130 CCDC110Q8TBZ0 833 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 FAM111AQ96PZ2 611 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 PIP5K1AQ99755 562 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 SH3GL2Q99962 352 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 TTPALQ9BTX7 342 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 FAM129AQ9BZQ8 928 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 PCED1AQ9H1Q7 454 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 DPH5Q9H2P9 285 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 MTG2Q9H4K7 406 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 SLC35D1Q9NTN3 355 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 ABCB8Q9NUT2 735 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 NMRK1Q9NWW6 199 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 SLC25A10Q9UBX3 287 aaPredicted RBP6.57□□□□□ -1.36
VPS29-210ENST00000552130 TBC1D30Q9Y2I9 924 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 ASB1Q9Y576 335 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 PCDHGA5Q9Y5G8 931 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 PCDHGA1Q9Y5H4 931 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 CLDN16Q9Y5I7 305 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 X6R8D5 127 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 RAD54L2Q9Y4B4 1467 aa6.57□□□□□ -1.36
VPS29-210ENST00000552130 A0A1W2PQJ5 194 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 FRMD3A2A2Y4 597 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 RAB27BO00194 218 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 PRPF4O43172 522 aaKnown RBP eCLIP6.56□□□□□ -1.36
VPS29-210ENST00000552130 SUV39H1O43463 412 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 DIAPH2O60879 1101 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 TULP3O75386 442 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 E2F6O75461 281 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 GHRP10912 638 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 HSPA5P11021 654 aaKnown RBP6.56□□□□□ -1.36
VPS29-210ENST00000552130 SP100P23497 879 aaPredicted RBP6.56□□□□□ -1.36
VPS29-210ENST00000552130 MCM3P25205 808 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 MST1P26927 711 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 ACVR2AP27037 513 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 GDI1P31150 447 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 SKIV2L2P42285 1042 aaKnown RBP6.56□□□□□ -1.36
VPS29-210ENST00000552130 PIK3CGP48736 1102 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 RGS3P49796 1198 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 ATXN3P54252 364 aaPredicted RBP6.56□□□□□ -1.36
VPS29-210ENST00000552130 CDH8P55286 799 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 RUNX1T1Q06455 604 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 KIF5AQ12840 1032 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 NPRL3Q12980 569 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 NRN1LQ496H8 165 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 SLC25A24Q6NUK1 477 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 TTI2Q6NXR4 508 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 ZCCHC12Q6PEW1 402 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 GLB1L2Q8IW92 636 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 CNTN4Q8IWV2 1026 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 RBM12BQ8IXT5 1001 aaKnown RBP6.56□□□□□ -1.36
VPS29-210ENST00000552130 ELOA2Q8IYF1 753 aaPredicted RBP6.56□□□□□ -1.36
VPS29-210ENST00000552130 LRRC43Q8N309 656 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 ANKRD44Q8N8A2 993 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 OR6C4Q8NGE1 309 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 RFWD2Q8NHY2 731 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 DUSP19Q8WTR2 217 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 SLC5A11Q8WWX8 675 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 PRCCQ92733 491 aaPredicted RBP6.56□□□□□ -1.36
VPS29-210ENST00000552130 SPSB4Q96A44 273 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 RBM17Q96I25 401 aaKnown RBP6.56□□□□□ -1.36
VPS29-210ENST00000552130 RBM14Q96PK6 669 aaKnown RBP6.56□□□□□ -1.36
VPS29-210ENST00000552130 FOXB1Q99853 325 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 NYXQ9GZU5 481 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 SLC5A7Q9GZV3 580 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 ISCUQ9H1K1 167 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 RWDD1Q9H446 243 aaPredicted RBP6.56□□□□□ -1.36
VPS29-210ENST00000552130 SEMA4BQ9NPR2 832 aaPredicted RBP6.56□□□□□ -1.36
VPS29-210ENST00000552130 MBNL1Q9NR56 388 aaKnown RBP6.56□□□□□ -1.36
VPS29-210ENST00000552130 POLR3BQ9NW08 1133 aaPredicted RBP6.56□□□□□ -1.36
VPS29-210ENST00000552130 ZSCAN32Q9NX65 697 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 GALNT8Q9NY28 637 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 MARCH2Q9P0N8 246 aa6.56□□□□□ -1.36
VPS29-210ENST00000552130 FAM153AQ9UHL3 310 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms