RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 ARID5BQ14865 1188 aa19.74■□□□□ 0.75
CCDC28A-203ENST00000617445 PLEKHG6Q3KR16 790 aa19.74■□□□□ 0.75
CCDC28A-203ENST00000617445 MIIPQ5JXC2 388 aa19.74■□□□□ 0.75
CCDC28A-203ENST00000617445 TTC39BQ5VTQ0 682 aaPredicted RBP19.74■□□□□ 0.75
CCDC28A-203ENST00000617445 LGI2Q8N0V4 545 aa19.74■□□□□ 0.75
CCDC28A-203ENST00000617445 CARNMT1Q8N4J0 409 aa19.74■□□□□ 0.75
CCDC28A-203ENST00000617445 CNTNAP3BQ96NU0 1288 aa19.74■□□□□ 0.75
CCDC28A-203ENST00000617445 CNTNAP3Q9BZ76 1288 aa19.74■□□□□ 0.75
CCDC28A-203ENST00000617445 PRSS16Q9NQE7 514 aa19.74■□□□□ 0.75
CCDC28A-203ENST00000617445 RRN3Q9NYV6 651 aa19.74■□□□□ 0.75
CCDC28A-203ENST00000617445 SCML1Q9UN30 329 aa19.74■□□□□ 0.75
CCDC28A-203ENST00000617445 KNL1Q8NG31 2342 aa19.74■□□□□ 0.75
CCDC28A-203ENST00000617445 PCDH15Q96QU1 1955 aa19.74■□□□□ 0.75
CCDC28A-203ENST00000617445 MUC22E2RYF6 1773 aaPredicted RBP19.73■□□□□ 0.75
CCDC28A-203ENST00000617445 A0A1B0GTW7 788 aa19.73■□□□□ 0.75
CCDC28A-203ENST00000617445 F5H5T6 163 aa19.73■□□□□ 0.75
CCDC28A-203ENST00000617445 H0Y626 953 aa19.73■□□□□ 0.75
CCDC28A-203ENST00000617445 SRPRAP08240 638 aaKnown RBP19.73■□□□□ 0.75
CCDC28A-203ENST00000617445 TACR2P21452 398 aa19.73■□□□□ 0.75
CCDC28A-203ENST00000617445 CSKP41240 450 aa19.73■□□□□ 0.75
CCDC28A-203ENST00000617445 SEMA3BQ13214 749 aa19.73■□□□□ 0.75
CCDC28A-203ENST00000617445 SLC14A1Q13336 389 aa19.73■□□□□ 0.75
CCDC28A-203ENST00000617445 KCNJ12Q14500 433 aa19.73■□□□□ 0.75
CCDC28A-203ENST00000617445 SLC26A9Q7LBE3 791 aa19.73■□□□□ 0.75
CCDC28A-203ENST00000617445 SLC47A2Q86VL8 602 aa19.73■□□□□ 0.75
CCDC28A-203ENST00000617445 CHSY1Q86X52 802 aa19.73■□□□□ 0.75
CCDC28A-203ENST00000617445 DEFB106AQ8N104 65 aa19.73■□□□□ 0.75
CCDC28A-203ENST00000617445 C1orf131Q8NDD1 294 aaKnown RBP19.73■□□□□ 0.75
CCDC28A-203ENST00000617445 ZNF397Q8NF99 534 aaPredicted RBP19.73■□□□□ 0.75
CCDC28A-203ENST00000617445 PPP1R9BQ96SB3 815 aa19.73■□□□□ 0.75
CCDC28A-203ENST00000617445 GTPBP2Q9BX10 602 aaKnown RBP19.73■□□□□ 0.75
CCDC28A-203ENST00000617445 SYNCQ9H7C4 482 aa19.73■□□□□ 0.75
CCDC28A-203ENST00000617445 FAM204AQ9H8W3 233 aa19.73■□□□□ 0.75
CCDC28A-203ENST00000617445 DNAAF2Q9NVR5 837 aaKnown RBP19.73■□□□□ 0.75
CCDC28A-203ENST00000617445 DDIT4Q9NX09 232 aa19.73■□□□□ 0.75
CCDC28A-203ENST00000617445 CEP295Q9C0D2 2601 aa19.73■□□□□ 0.75
CCDC28A-203ENST00000617445 NUMA1Q14980 2115 aa19.73■□□□□ 0.75
CCDC28A-203ENST00000617445 RNASEH1O60930 286 aaKnown RBP19.72■□□□□ 0.75
CCDC28A-203ENST00000617445 DNTTP04053 509 aa19.72■□□□□ 0.75
CCDC28A-203ENST00000617445 SLC6A3Q01959 620 aa19.72■□□□□ 0.75
CCDC28A-203ENST00000617445 HNRNPDQ14103 355 aaKnown RBP19.72■□□□□ 0.75
CCDC28A-203ENST00000617445 TAF5Q15542 800 aa19.72■□□□□ 0.75
CCDC28A-203ENST00000617445 TTC31Q49AM3 519 aaPredicted RBP19.72■□□□□ 0.75
CCDC28A-203ENST00000617445 TCP11X2Q5H9J9 407 aa19.72■□□□□ 0.75
CCDC28A-203ENST00000617445 RABGAP1LQ5R372 815 aa19.72■□□□□ 0.75
CCDC28A-203ENST00000617445 KLHDC7AQ5VTJ3 777 aa19.72■□□□□ 0.75
CCDC28A-203ENST00000617445 DCAF12L1Q5VU92 463 aa19.72■□□□□ 0.75
CCDC28A-203ENST00000617445 RAP1GAP2Q684P5 730 aa19.72■□□□□ 0.75
CCDC28A-203ENST00000617445 OR6B2Q6IFH4 312 aa19.72■□□□□ 0.75
CCDC28A-203ENST00000617445 DPY19L2P1Q6NXN4 242 aa19.72■□□□□ 0.75
CCDC28A-203ENST00000617445 OLFML1Q6UWY5 402 aa19.72■□□□□ 0.75
CCDC28A-203ENST00000617445 PASD1Q8IV76 773 aa19.72■□□□□ 0.75
CCDC28A-203ENST00000617445 CFAP52Q8N1V2 620 aa19.72■□□□□ 0.75
CCDC28A-203ENST00000617445 MINDY1Q8N5J2 469 aa19.72■□□□□ 0.75
CCDC28A-203ENST00000617445 TMEM35BQ8NCS4 154 aa19.72■□□□□ 0.75
CCDC28A-203ENST00000617445 RNF34Q969K3 372 aa19.72■□□□□ 0.75
CCDC28A-203ENST00000617445 LMBRD1Q9NUN5 540 aa19.72■□□□□ 0.75
CCDC28A-203ENST00000617445 INTS6Q9UL03 887 aaKnown RBP19.72■□□□□ 0.75
CCDC28A-203ENST00000617445 MAP1BP46821 2468 aaKnown RBP19.71■□□□□ 0.75
CCDC28A-203ENST00000617445 TARSL2A2RTX5 802 aaKnown RBP19.71■□□□□ 0.75
CCDC28A-203ENST00000617445 PES1O00541 588 aaKnown RBP19.71■□□□□ 0.75
CCDC28A-203ENST00000617445 NOS2P35228 1153 aa19.71■□□□□ 0.75
CCDC28A-203ENST00000617445 RPS14P62263 151 aaKnown RBP19.71■□□□□ 0.75
CCDC28A-203ENST00000617445 SULT2A1Q06520 285 aa19.71■□□□□ 0.75
CCDC28A-203ENST00000617445 DRAP1Q14919 205 aaPredicted RBP19.71■□□□□ 0.75
CCDC28A-203ENST00000617445 HNRNPA1L2Q32P51 320 aaKnown RBP19.71■□□□□ 0.75
CCDC28A-203ENST00000617445 PITRM1Q5JRX3 1037 aa19.71■□□□□ 0.75
CCDC28A-203ENST00000617445 ZNF776Q68DI1 518 aaPredicted RBP19.71■□□□□ 0.75
CCDC28A-203ENST00000617445 FAM183BPQ6ZVS7 135 aa19.71■□□□□ 0.75
CCDC28A-203ENST00000617445 PIP4P1Q86T03 277 aa19.71■□□□□ 0.75
CCDC28A-203ENST00000617445 ZNF366Q8N895 744 aa19.71■□□□□ 0.75
CCDC28A-203ENST00000617445 ENOX1Q8TC92 643 aaKnown RBP19.71■□□□□ 0.75
CCDC28A-203ENST00000617445 MYEOVQ96EZ4 313 aa19.71■□□□□ 0.75
CCDC28A-203ENST00000617445 MYO19Q96H55 970 aa19.71■□□□□ 0.75
CCDC28A-203ENST00000617445 PRMT1Q99873 361 aaKnown RBP19.71■□□□□ 0.75
CCDC28A-203ENST00000617445 BTBD1Q9H0C5 482 aa19.71■□□□□ 0.75
CCDC28A-203ENST00000617445 RSPH9Q9H1X1 276 aaPredicted RBP19.71■□□□□ 0.75
CCDC28A-203ENST00000617445 PDCL3Q9H2J4 239 aa19.71■□□□□ 0.75
CCDC28A-203ENST00000617445 SGK2Q9HBY8 427 aa19.71■□□□□ 0.75
CCDC28A-203ENST00000617445 XPO7Q9UIA9 1087 aaKnown RBP19.71■□□□□ 0.75
CCDC28A-203ENST00000617445 AJAP1Q9UKB5 411 aaPredicted RBP19.71■□□□□ 0.75
CCDC28A-203ENST00000617445 NCKAP1Q9Y2A7 1128 aa19.71■□□□□ 0.75
CCDC28A-203ENST00000617445 GIPC1O14908 333 aa19.7■□□□□ 0.74
CCDC28A-203ENST00000617445 BCAT2O15382 392 aaPredicted RBP19.7■□□□□ 0.74
CCDC28A-203ENST00000617445 DAB1O75553 588 aa19.7■□□□□ 0.74
CCDC28A-203ENST00000617445 MAOBP27338 520 aa19.7■□□□□ 0.74
CCDC28A-203ENST00000617445 CDH5P33151 784 aaPredicted RBP19.7■□□□□ 0.74
CCDC28A-203ENST00000617445 SCNN1AP37088 669 aa19.7■□□□□ 0.74
CCDC28A-203ENST00000617445 NNMTP40261 264 aa19.7■□□□□ 0.74
CCDC28A-203ENST00000617445 PITX1P78337 314 aaPredicted RBP19.7■□□□□ 0.74
CCDC28A-203ENST00000617445 ECT2LQ008S8 904 aa19.7■□□□□ 0.74
CCDC28A-203ENST00000617445 ZNF252P-AS1Q0IIN9 211 aa19.7■□□□□ 0.74
CCDC28A-203ENST00000617445 KCNMA1Q12791 1236 aa19.7■□□□□ 0.74
CCDC28A-203ENST00000617445 RAPGEF1Q13905 1077 aa19.7■□□□□ 0.74
CCDC28A-203ENST00000617445 PTPN20Q4JDL3 420 aa19.7■□□□□ 0.74
CCDC28A-203ENST00000617445 FSCBQ5H9T9 825 aa19.7■□□□□ 0.74
CCDC28A-203ENST00000617445 RNF219Q5W0B1 726 aaPredicted RBP19.7■□□□□ 0.74
CCDC28A-203ENST00000617445 USP30Q70CQ3 517 aa19.7■□□□□ 0.74
CCDC28A-203ENST00000617445 MRGPRX3Q96LB0 322 aa19.7■□□□□ 0.74
CCDC28A-203ENST00000617445 GBP4Q96PP9 640 aa19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms