RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 CHD9Q3L8U1 2897 aa8.96□□□□□ -0.97
LIMCH1-209ENST00000509277 M0QYT0 321 aa8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 RFPL2O75678 378 aa8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 CYP1A1P04798 512 aaPredicted RBP8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 CNPP09543 421 aaKnown RBP8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 KRT15P19012 456 aa8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 CTNNA2P26232 953 aa8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 ENPEPQ07075 957 aa8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 EFEMP1Q12805 493 aa8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 MON1BQ7L1V2 547 aa8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 XYLT1Q86Y38 959 aa8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 CRYBG2Q8N1P7 616 aa8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 UBR7Q8N806 425 aa8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 GADD45GIP1Q8TAE8 222 aaPredicted RBP8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 SPOCK2Q92563 424 aa8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 SLC9A7Q96T83 725 aa8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 FAM129AQ9BZQ8 928 aa8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 ISCUQ9H1K1 167 aa8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 DDIT4Q9NX09 232 aa8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 KIAA1257Q9ULG3 409 aa8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 TMA7Q9Y2S6 64 aaKnown RBP8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 SCINQ9Y6U3 715 aa8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 MTMR11A4FU01 709 aa8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 CFAP73A6NFT4 308 aa8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 M0QZQ0 153 aa8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 DNAJC8O75937 253 aaPredicted RBP8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 KRT1P04264 644 aa8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 BRAFP15056 766 aa8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 TWF1Q12792 350 aa8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 C10orf120Q5SQS8 335 aa8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 C10orf76Q5T2E6 689 aa8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 MAP7D3Q8IWC1 876 aa8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 FITM2Q8N6M3 262 aa8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 FAM172AQ8WUF8 416 aa8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 CORO1BQ9BR76 489 aa8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 MAGEB5Q9BZ81 275 aa8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 CARD9Q9H257 536 aa8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 EBF2Q9HAK2 575 aa8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 SLC12A6Q9UHW9 1150 aa8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 STRIP2Q9ULQ0 834 aa8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 YBX2Q9Y2T7 364 aaKnown RBP8.96□□□□□ -0.98
LIMCH1-209ENST00000509277 GABRDO14764 452 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 LRG1P02750 347 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 SOD2P04179 222 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 SRGAP2BP0DMP2 458 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 PPM1AP35813 382 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 PMS2P54278 862 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 MRPS35P82673 323 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 OGDHQ02218 1023 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 TAF10Q12962 218 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 BYSLQ13895 437 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 TMED2Q15363 201 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 STILQ15468 1287 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 MAPRE1Q15691 268 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 CCDC85BQ15834 202 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 TMC5Q6UXY8 1006 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 DENND5BQ6ZUT9 1274 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 CMTR2Q8IYT2 770 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 ZMIZ2Q8NF64 920 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 RAB3IL1Q8TBN0 382 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 CCDC124Q96CT7 223 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 TRIM11Q96F44 468 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 HNRNPABQ99729 332 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 RAB17Q9H0T7 212 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 DHX35Q9H5Z1 703 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 ETNK2Q9NVF9 386 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 GMIPQ9P107 970 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 RASAL2Q9UJF2 1139 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 F5H423 210 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 SYN3O14994 580 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 PRPSAP2O60256 369 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 ZBED1O96006 694 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 FESP07332 822 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 KRT10P13645 584 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 BMPR1AP36894 532 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 KRT81Q14533 505 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 VEPH1Q14D04 833 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 MAP7D1Q3KQU3 841 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 SYPL2Q5VXT5 272 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 TXNRD3NBQ6F5E7 133 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 RAB3IPQ96QF0 476 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 CLSTN3Q9BQT9 956 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 TMEM175Q9BSA9 504 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 PBX4Q9BYU1 374 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 CDH22Q9UJ99 828 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 DOLKQ9UPQ8 538 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 NR2E1Q9Y466 385 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 SNX10Q9Y5X0 201 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 A0A1W2PQH9 124 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 PGM3O95394 542 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 LSM8O95777 96 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 RARAP10276 462 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 TYMPP19971 482 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 GPD1P21695 349 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 FECHP22830 423 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 ATXN3P54252 364 aaPredicted RBP8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 SNX16P57768 344 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 DR1Q01658 176 aa8.95□□□□□ -0.98
LIMCH1-209ENST00000509277 PPP1R2P3Q6NXS1 205 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms