RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 ARPP19P56211 112 aa19.78■□□□□ 0.76
USP48-201ENST00000308271 DMC1Q14565 340 aa19.78■□□□□ 0.76
USP48-201ENST00000308271 CCDC81Q6ZN84 652 aa19.78■□□□□ 0.76
USP48-201ENST00000308271 RINLQ6ZS11 566 aa19.78■□□□□ 0.76
USP48-201ENST00000308271 MFSD14AQ96MC6 490 aa19.78■□□□□ 0.76
USP48-201ENST00000308271 COG4Q9H9E3 785 aa19.78■□□□□ 0.76
USP48-201ENST00000308271 ATAD3AQ9NVI7 634 aa19.78■□□□□ 0.76
USP48-201ENST00000308271 MYO1GB0I1T2 1018 aa19.77■□□□□ 0.76
USP48-201ENST00000308271 KCTD21Q4G0X4 260 aa19.77■□□□□ 0.76
USP48-201ENST00000308271 ANKS1BQ7Z6G8 1248 aa19.77■□□□□ 0.76
USP48-201ENST00000308271 CHSY1Q86X52 802 aa19.77■□□□□ 0.76
USP48-201ENST00000308271 ZBTB45Q96K62 511 aaPredicted RBP19.77■□□□□ 0.76
USP48-201ENST00000308271 ZNF570Q96NI8 536 aa19.77■□□□□ 0.76
USP48-201ENST00000308271 ZC4H2Q9NQZ6 224 aa19.77■□□□□ 0.76
USP48-201ENST00000308271 GALNT8Q9NY28 637 aa19.77■□□□□ 0.76
USP48-201ENST00000308271 FAM8A1Q9UBU6 413 aa19.77■□□□□ 0.76
USP48-201ENST00000308271 DAPK2Q9UIK4 370 aa19.77■□□□□ 0.76
USP48-201ENST00000308271 PCDHA11Q9Y5I1 949 aa19.77■□□□□ 0.76
USP48-201ENST00000308271 SPATA31A5Q5VU36 1347 aa19.77■□□□□ 0.76
USP48-201ENST00000308271 SPATA31A7Q8IWB4 1347 aa19.77■□□□□ 0.76
USP48-201ENST00000308271 STAG3L1P0CL83 205 aa19.77■□□□□ 0.76
USP48-201ENST00000308271 VCLP18206 1134 aa19.77■□□□□ 0.76
USP48-201ENST00000308271 FOXD4Q12950 439 aaPredicted RBP19.77■□□□□ 0.76
USP48-201ENST00000308271 CSHL1Q14406 222 aa19.77■□□□□ 0.76
USP48-201ENST00000308271 TTC7BQ86TV6 843 aa19.77■□□□□ 0.76
USP48-201ENST00000308271 SPON2Q9BUD6 331 aa19.77■□□□□ 0.76
USP48-201ENST00000308271 TRIM54Q9BYV2 358 aa19.77■□□□□ 0.76
USP48-201ENST00000308271 SEMA6AQ9H2E6 1030 aa19.77■□□□□ 0.76
USP48-201ENST00000308271 ZNRF3Q9ULT6 936 aa19.77■□□□□ 0.76
USP48-201ENST00000308271 PIN4Q9Y237 131 aaKnown RBP19.77■□□□□ 0.76
USP48-201ENST00000308271 PPP1R11O60927 126 aaPredicted RBP19.77■□□□□ 0.75
USP48-201ENST00000308271 F9P00740 461 aa19.77■□□□□ 0.75
USP48-201ENST00000308271 NPY2RP49146 381 aa19.77■□□□□ 0.75
USP48-201ENST00000308271 CYP4X1Q8N118 509 aa19.77■□□□□ 0.75
USP48-201ENST00000308271 C10orf82Q8WW14 230 aa19.77■□□□□ 0.75
USP48-201ENST00000308271 DHX33Q9H6R0 707 aaKnown RBP19.77■□□□□ 0.75
USP48-201ENST00000308271 NDFIP2Q9NV92 336 aa19.77■□□□□ 0.75
USP48-201ENST00000308271 TAS2R1Q9NYW7 299 aa19.77■□□□□ 0.75
USP48-201ENST00000308271 PPME1Q9Y570 386 aa19.77■□□□□ 0.75
USP48-201ENST00000308271 PIK3C2AO00443 1686 aa19.77■□□□□ 0.75
USP48-201ENST00000308271 RNF103O00237 685 aa19.76■□□□□ 0.75
USP48-201ENST00000308271 ADAMTS3O15072 1205 aa19.76■□□□□ 0.75
USP48-201ENST00000308271 ZMPSTE24O75844 475 aa19.76■□□□□ 0.75
USP48-201ENST00000308271 RTN3O95197 1032 aaPredicted RBP19.76■□□□□ 0.75
USP48-201ENST00000308271 LDLRP01130 860 aa19.76■□□□□ 0.75
USP48-201ENST00000308271 EIF2B2P49770 351 aaKnown RBP19.76■□□□□ 0.75
USP48-201ENST00000308271 TDRD10Q5VZ19 366 aaKnown RBP19.76■□□□□ 0.75
USP48-201ENST00000308271 RNF157Q96PX1 679 aa19.76■□□□□ 0.75
USP48-201ENST00000308271 ADAM28Q9UKQ2 775 aa19.76■□□□□ 0.75
USP48-201ENST00000308271 HBS1LQ9Y450 684 aaKnown RBP19.76■□□□□ 0.75
USP48-201ENST00000308271 CLASP2O75122 1294 aaKnown RBP19.76■□□□□ 0.75
USP48-201ENST00000308271 CDH17Q12864 832 aa19.76■□□□□ 0.75
USP48-201ENST00000308271 NEDD8Q15843 81 aa19.76■□□□□ 0.75
USP48-201ENST00000308271 LPCAT4Q643R3 524 aa19.76■□□□□ 0.75
USP48-201ENST00000308271 TRPC4APQ8TEL6 797 aa19.76■□□□□ 0.75
USP48-201ENST00000308271 GLMNQ92990 594 aa19.76■□□□□ 0.75
USP48-201ENST00000308271 CD274Q9NZQ7 290 aa19.76■□□□□ 0.75
USP48-201ENST00000308271 ADGRA2Q96PE1 1338 aa19.76■□□□□ 0.75
USP48-201ENST00000308271 TMEM247A6NEH6 219 aa19.76■□□□□ 0.75
USP48-201ENST00000308271 PHGDHO43175 533 aaKnown RBP19.76■□□□□ 0.75
USP48-201ENST00000308271 MYO1DO94832 1006 aa19.76■□□□□ 0.75
USP48-201ENST00000308271 DLGAP3O95886 979 aa19.76■□□□□ 0.75
USP48-201ENST00000308271 ACSBG2Q5FVE4 666 aa19.76■□□□□ 0.75
USP48-201ENST00000308271 ADCY4Q8NFM4 1077 aa19.76■□□□□ 0.75
USP48-201ENST00000308271 NAT14Q8WUY8 206 aa19.76■□□□□ 0.75
USP48-201ENST00000308271 THUMPD3Q9BV44 507 aaKnown RBP19.76■□□□□ 0.75
USP48-201ENST00000308271 BRD8Q9H0E9 1235 aa19.76■□□□□ 0.75
USP48-201ENST00000308271 TIMMDC1Q9NPL8 285 aa19.76■□□□□ 0.75
USP48-201ENST00000308271 TMEM114B3SHH9 223 aa19.76■□□□□ 0.75
USP48-201ENST00000308271 HDAC3O15379 428 aa19.76■□□□□ 0.75
USP48-201ENST00000308271 JCHAINP01591 159 aa19.76■□□□□ 0.75
USP48-201ENST00000308271 CRABP2P29373 138 aa19.76■□□□□ 0.75
USP48-201ENST00000308271 FASTKD3Q14CZ7 662 aaKnown RBP19.76■□□□□ 0.75
USP48-201ENST00000308271 KIZQ2M2Z5 673 aa19.76■□□□□ 0.75
USP48-201ENST00000308271 DCAF12L1Q5VU92 463 aa19.76■□□□□ 0.75
USP48-201ENST00000308271 HELQQ8TDG4 1101 aa19.76■□□□□ 0.75
USP48-201ENST00000308271 OSBPL11Q9BXB4 747 aa19.76■□□□□ 0.75
USP48-201ENST00000308271 UBQLN1Q9UMX0 589 aaKnown RBP19.76■□□□□ 0.75
USP48-201ENST00000308271 AFDNP55196 1824 aaKnown RBP19.75■□□□□ 0.75
USP48-201ENST00000308271 CXCL8P10145 99 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 MLH1P40692 756 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 ZNF143P52747 638 aaPredicted RBP19.75■□□□□ 0.75
USP48-201ENST00000308271 SLC18A1P54219 525 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 RAD23AP54725 363 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 NME5P56597 212 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 NPNTQ6UXI9 565 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 CCDC103Q8IW40 242 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 ZCCHC7Q8N3Z6 543 aaKnown RBP19.75■□□□□ 0.75
USP48-201ENST00000308271 WDCPQ9H6R7 721 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 PNPLA3Q9NST1 481 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 CCDC167Q9P0B6 97 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 CBFA2T3O75081 653 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 XPAP23025 273 aaPredicted RBP19.75■□□□□ 0.75
USP48-201ENST00000308271 AMPD1P23109 780 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 CD151P48509 253 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 TAF6P49848 677 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 RAP1GDS1P52306 607 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 RUNX1T1Q06455 604 aa19.75■□□□□ 0.75
USP48-201ENST00000308271 SFSWAPQ12872 951 aaKnown RBP19.75■□□□□ 0.75
USP48-201ENST00000308271 RNASEH2BQ5TBB1 312 aaKnown RBP19.75■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms