RNA–Protein interactions for RNA: ENST00000492793.1

CLK1-213, Transcript of CDC like kinase 1, humanhuman

TSL 4

Gene CLK1, Length 596 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-213ENST00000492793 TBC1D3HP0C7X1 549 aa4.51□□□□□ -1.69
CLK1-213ENST00000492793 KRT4P19013 534 aa4.51□□□□□ -1.69
CLK1-213ENST00000492793 SERPINA4P29622 427 aa4.51□□□□□ -1.69
CLK1-213ENST00000492793 GALNSP34059 522 aa4.51□□□□□ -1.69
CLK1-213ENST00000492793 ARL4CP56559 192 aa4.51□□□□□ -1.69
CLK1-213ENST00000492793 CYP4F2P78329 520 aa4.51□□□□□ -1.69
CLK1-213ENST00000492793 TMEM95Q3KNT9 176 aa4.51□□□□□ -1.69
CLK1-213ENST00000492793 RNASE12Q5GAN4 147 aaKnown RBP4.51□□□□□ -1.69
CLK1-213ENST00000492793 FAM90A2PQ658T7 463 aa4.51□□□□□ -1.69
CLK1-213ENST00000492793 TBC1D3GQ6DHY5 549 aa4.51□□□□□ -1.69
CLK1-213ENST00000492793 TANGO2Q6ICL3 276 aa4.51□□□□□ -1.69
CLK1-213ENST00000492793 TBC1D3CQ6IPX1 549 aa4.51□□□□□ -1.69
CLK1-213ENST00000492793 CEP85Q6P2H3 762 aa4.51□□□□□ -1.69
CLK1-213ENST00000492793 TMEM65Q6PI78 240 aa4.51□□□□□ -1.69
CLK1-213ENST00000492793 MOGAT3Q86VF5 341 aa4.51□□□□□ -1.69
CLK1-213ENST00000492793 C2CD5Q86YS7 1000 aa4.51□□□□□ -1.69
CLK1-213ENST00000492793 SFTPA1Q8IWL2 248 aa4.51□□□□□ -1.69
CLK1-213ENST00000492793 SUGP1Q8IWZ8 645 aaKnown RBP4.51□□□□□ -1.69
CLK1-213ENST00000492793 TBC1D3Q8IZP1 549 aaPredicted RBP4.51□□□□□ -1.69
CLK1-213ENST00000492793 PAF1Q8N7H5 531 aa4.51□□□□□ -1.69
CLK1-213ENST00000492793 C12orf76Q8N812 135 aaPredicted RBP4.51□□□□□ -1.69
CLK1-213ENST00000492793 TERB1Q8NA31 727 aa4.51□□□□□ -1.69
CLK1-213ENST00000492793 OR6Y1Q8NGX8 325 aa4.51□□□□□ -1.69
CLK1-213ENST00000492793 MAFAQ8NHW3 353 aaPredicted RBP4.51□□□□□ -1.69
CLK1-213ENST00000492793 OVCA2Q8WZ82 227 aa4.51□□□□□ -1.69
CLK1-213ENST00000492793 TBC1D5Q92609 795 aa4.51□□□□□ -1.69
CLK1-213ENST00000492793 RSC1A1Q92681 617 aa4.51□□□□□ -1.69
CLK1-213ENST00000492793 RILPL2Q969X0 211 aa4.51□□□□□ -1.69
CLK1-213ENST00000492793 GCC1Q96CN9 775 aa4.51□□□□□ -1.69
CLK1-213ENST00000492793 MECRQ9BV79 373 aa4.51□□□□□ -1.69
CLK1-213ENST00000492793 ADGRE3Q9BY15 652 aa4.51□□□□□ -1.69
CLK1-213ENST00000492793 VPS16Q9H269 839 aa4.51□□□□□ -1.69
CLK1-213ENST00000492793 LIN7CQ9NUP9 197 aaKnown RBP4.51□□□□□ -1.69
CLK1-213ENST00000492793 RRN3Q9NYV6 651 aa4.51□□□□□ -1.69
CLK1-213ENST00000492793 ING1Q9UK53 422 aaPredicted RBP4.51□□□□□ -1.69
CLK1-213ENST00000492793 BAG5Q9UL15 447 aa4.51□□□□□ -1.69
CLK1-213ENST00000492793 TRPC5Q9UL62 973 aaPredicted RBP4.51□□□□□ -1.69
CLK1-213ENST00000492793 GPR52Q9Y2T5 361 aa4.51□□□□□ -1.69
CLK1-213ENST00000492793 UBE2J1Q9Y385 318 aaPredicted RBP4.51□□□□□ -1.69
CLK1-213ENST00000492793 CCDC187A0A096LP49 1063 aa4.5□□□□□ -1.69
CLK1-213ENST00000492793 E7EVH7 732 aa4.5□□□□□ -1.69
CLK1-213ENST00000492793 H0Y3Z8 333 aa4.5□□□□□ -1.69
CLK1-213ENST00000492793 M0QYT0 321 aa4.5□□□□□ -1.69
CLK1-213ENST00000492793 FYB1O15117 783 aa4.5□□□□□ -1.69
CLK1-213ENST00000492793 PRAMEF2O60811 474 aa4.5□□□□□ -1.69
CLK1-213ENST00000492793 TJP3O95049 919 aa4.5□□□□□ -1.69
CLK1-213ENST00000492793 LARGE1O95461 756 aa4.5□□□□□ -1.69
CLK1-213ENST00000492793 HSD3B1P14060 373 aa4.5□□□□□ -1.69
CLK1-213ENST00000492793 GPD1P21695 349 aa4.5□□□□□ -1.69
CLK1-213ENST00000492793 CST5P28325 142 aaPredicted RBP4.5□□□□□ -1.69
CLK1-213ENST00000492793 GRK5P34947 590 aa4.5□□□□□ -1.69
CLK1-213ENST00000492793 RBM5P52756 815 aaKnown RBP eCLIP4.5□□□□□ -1.69
CLK1-213ENST00000492793 PNLIPRP1P54315 467 aa4.5□□□□□ -1.69
CLK1-213ENST00000492793 RAE1P78406 368 aaKnown RBP4.5□□□□□ -1.69
CLK1-213ENST00000492793 PDCLQ13371 301 aa4.5□□□□□ -1.69
CLK1-213ENST00000492793 DNASE1L3Q13609 305 aa4.5□□□□□ -1.69
CLK1-213ENST00000492793 MFSD13AQ14CX5 517 aa4.5□□□□□ -1.69
CLK1-213ENST00000492793 CC2D1BQ5T0F9 858 aaKnown RBP4.5□□□□□ -1.69
CLK1-213ENST00000492793 OLFML1Q6UWY5 402 aa4.5□□□□□ -1.69
CLK1-213ENST00000492793 Q6ZPA2 131 aa4.5□□□□□ -1.69
CLK1-213ENST00000492793 SYT13Q7L8C5 426 aa4.5□□□□□ -1.69
CLK1-213ENST00000492793 C16orf71Q8IYS4 520 aaPredicted RBP4.5□□□□□ -1.69
CLK1-213ENST00000492793 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.5□□□□□ -1.69
CLK1-213ENST00000492793 GPR150Q8NGU9 434 aa4.5□□□□□ -1.69
CLK1-213ENST00000492793 CCDC17Q96LX7 622 aa4.5□□□□□ -1.69
CLK1-213ENST00000492793 SCAND2PQ9GZW5 306 aaPredicted RBP4.5□□□□□ -1.69
CLK1-213ENST00000492793 CHODLQ9H9P2 273 aa4.5□□□□□ -1.69
CLK1-213ENST00000492793 VPS45Q9NRW7 570 aa4.5□□□□□ -1.69
CLK1-213ENST00000492793 NDUFAF4Q9P032 175 aa4.5□□□□□ -1.69
CLK1-213ENST00000492793 KCND3Q9UK17 655 aa4.5□□□□□ -1.69
CLK1-213ENST00000492793 SLC12A4Q9UP95 1085 aa4.5□□□□□ -1.69
CLK1-213ENST00000492793 FAM90A18PA6NE21 464 aa4.49□□□□□ -1.69
CLK1-213ENST00000492793 FAM90A16PA6NEW6 464 aa4.49□□□□□ -1.69
CLK1-213ENST00000492793 AGAP5A6NIR3 686 aa4.49□□□□□ -1.69
CLK1-213ENST00000492793 FAM90A9PA6NNJ1 464 aa4.49□□□□□ -1.69
CLK1-213ENST00000492793 FAM90A5PA8MXJ8 464 aa4.49□□□□□ -1.69
CLK1-213ENST00000492793 TTC34A8MYJ7 566 aa4.49□□□□□ -1.69
CLK1-213ENST00000492793 CLIC1O00299 241 aa4.49□□□□□ -1.69
CLK1-213ENST00000492793 EIF3FO00303 357 aaPredicted RBP4.49□□□□□ -1.69
CLK1-213ENST00000492793 DHHO43323 396 aa4.49□□□□□ -1.69
CLK1-213ENST00000492793 JTBO76095 146 aa4.49□□□□□ -1.69
CLK1-213ENST00000492793 C1RP00736 705 aa4.49□□□□□ -1.69
CLK1-213ENST00000492793 FAM90A15PP0C7V4 464 aa4.49□□□□□ -1.69
CLK1-213ENST00000492793 FAM90A14PP0C7W9 464 aa4.49□□□□□ -1.69
CLK1-213ENST00000492793 ADD2P35612 726 aa4.49□□□□□ -1.69
CLK1-213ENST00000492793 PAPOLAP51003 745 aaKnown RBP4.49□□□□□ -1.69
CLK1-213ENST00000492793 JAK3P52333 1124 aa4.49□□□□□ -1.69
CLK1-213ENST00000492793 CACNA2D1P54289 1103 aa4.49□□□□□ -1.69
CLK1-213ENST00000492793 INHBCP55103 352 aa4.49□□□□□ -1.69
CLK1-213ENST00000492793 GPC5P78333 572 aa4.49□□□□□ -1.69
CLK1-213ENST00000492793 HOXA4Q00056 320 aaPredicted RBP4.49□□□□□ -1.69
CLK1-213ENST00000492793 GALNTL6Q49A17 601 aa4.49□□□□□ -1.69
CLK1-213ENST00000492793 ACSM6Q6P461 480 aa4.49□□□□□ -1.69
CLK1-213ENST00000492793 TRIM72Q6ZMU5 477 aa4.49□□□□□ -1.69
CLK1-213ENST00000492793 DCDC5Q6ZRR9 648 aa4.49□□□□□ -1.69
CLK1-213ENST00000492793 LDLRAD3Q86YD5 345 aa4.49□□□□□ -1.69
CLK1-213ENST00000492793 UROC1Q96N76 676 aa4.49□□□□□ -1.69
CLK1-213ENST00000492793 PYM1Q9BRP8 204 aaKnown RBP4.49□□□□□ -1.69
CLK1-213ENST00000492793 KRTAP4-5Q9BYR2 181 aa4.49□□□□□ -1.69
CLK1-213ENST00000492793 KLK15Q9H2R5 256 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms