RNA–Protein interactions for RNA: ENST00000378060.8

VPS36-201, Transcript of vacuolar protein sorting 36 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS36, Length 4,417 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-201ENST00000378060 SLFN11Q7Z7L1 901 aa8.64□□□□□ -1.03
VPS36-201ENST00000378060 MFN1Q8IWA4 741 aa8.64□□□□□ -1.03
VPS36-201ENST00000378060 KIAA2013Q8IYS2 634 aa8.64□□□□□ -1.03
VPS36-201ENST00000378060 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.64□□□□□ -1.03
VPS36-201ENST00000378060 RNF217Q8TC41 542 aa8.64□□□□□ -1.03
VPS36-201ENST00000378060 SYTL5Q8TDW5 730 aaPredicted RBP8.64□□□□□ -1.03
VPS36-201ENST00000378060 LZICQ8WZA0 190 aa8.64□□□□□ -1.03
VPS36-201ENST00000378060 SRPK1Q96SB4 655 aaKnown RBP8.64□□□□□ -1.03
VPS36-201ENST00000378060 GLIS2Q9BZE0 524 aaPredicted RBP8.64□□□□□ -1.03
VPS36-201ENST00000378060 DEFB129Q9H1M3 183 aa8.64□□□□□ -1.03
VPS36-201ENST00000378060 DDIT4Q9NX09 232 aa8.64□□□□□ -1.03
VPS36-201ENST00000378060 KCNK4Q9NYG8 393 aa8.64□□□□□ -1.03
VPS36-201ENST00000378060 AP4E1Q9UPM8 1137 aa8.64□□□□□ -1.03
VPS36-201ENST00000378060 REXO2Q9Y3B8 237 aaKnown RBP8.64□□□□□ -1.03
VPS36-201ENST00000378060 FARP1Q9Y4F1 1045 aaPredicted RBP8.64□□□□□ -1.03
VPS36-201ENST00000378060 SSTR1P30872 391 aa8.64□□□□□ -1.03
VPS36-201ENST00000378060 SERPINB5P36952 375 aa8.64□□□□□ -1.03
VPS36-201ENST00000378060 NAB1Q13506 487 aa8.64□□□□□ -1.03
VPS36-201ENST00000378060 ELMSAN1Q6PJG2 1045 aa8.64□□□□□ -1.03
VPS36-201ENST00000378060 C1orf186Q6ZWK4 172 aa8.64□□□□□ -1.03
VPS36-201ENST00000378060 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.64□□□□□ -1.03
VPS36-201ENST00000378060 STRA8Q7Z7C7 330 aa8.64□□□□□ -1.03
VPS36-201ENST00000378060 P3H2Q8IVL5 708 aa8.64□□□□□ -1.03
VPS36-201ENST00000378060 DCP1BQ8IZD4 617 aaKnown RBP8.64□□□□□ -1.03
VPS36-201ENST00000378060 DEFB107AQ8IZN7 70 aa8.64□□□□□ -1.03
VPS36-201ENST00000378060 FAM9CQ8IZT9 166 aa8.64□□□□□ -1.03
VPS36-201ENST00000378060 ZNF786Q8N393 782 aa8.64□□□□□ -1.03
VPS36-201ENST00000378060 ECSITQ9BQ95 431 aa8.64□□□□□ -1.03
VPS36-201ENST00000378060 MYLK2Q9H1R3 596 aa8.64□□□□□ -1.03
VPS36-201ENST00000378060 ZNF556Q9HAH1 456 aa8.64□□□□□ -1.03
VPS36-201ENST00000378060 KCNMB3Q9NPA1 279 aa8.64□□□□□ -1.03
VPS36-201ENST00000378060 TCF7L2Q9NQB0 619 aa8.64□□□□□ -1.03
VPS36-201ENST00000378060 ADARB2Q9NS39 739 aaKnown RBP8.64□□□□□ -1.03
VPS36-201ENST00000378060 CYP39A1Q9NYL5 469 aa8.64□□□□□ -1.03
VPS36-201ENST00000378060 CD274Q9NZQ7 290 aa8.64□□□□□ -1.03
VPS36-201ENST00000378060 VTI1BQ9UEU0 232 aa8.64□□□□□ -1.03
VPS36-201ENST00000378060 CYP3A7-CYP3A51PA0A087WV96 503 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP8.63□□□□□ -1.03
VPS36-201ENST00000378060 APOC4-APOC2K7ER74 178 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 EPHB6O15197 1021 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 TRIM13O60858 407 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 USP1O94782 785 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 APOC2P02655 101 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 MPOP05164 745 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 MYL4P12829 197 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 CYP3A7P24462 503 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 DNAJB2P25686 324 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 MARSP56192 900 aaKnown RBP8.63□□□□□ -1.03
VPS36-201ENST00000378060 RUNX1T1Q06455 604 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 TBL3Q12788 808 aaKnown RBP8.63□□□□□ -1.03
VPS36-201ENST00000378060 DMC1Q14565 340 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 CBWD6Q4V339 395 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 CBWD3Q5JTY5 395 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 CBWD5Q5RIA9 395 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 MAP4K3Q8IVH8 894 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 MICU2Q8IYU8 434 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 VPS37AQ8NEZ2 397 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 TUBGCP3Q96CW5 907 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 MMTAG2Q9BU76 263 aaKnown RBP8.63□□□□□ -1.03
VPS36-201ENST00000378060 PHACTR1Q9C0D0 580 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 WDCPQ9H6R7 721 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 PRDM16Q9HAZ2 1276 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 LATS2Q9NRM7 1088 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 SNX13Q9Y5W8 968 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 E2F8A0AVK6 867 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 PDE5AO76074 875 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 FBXO21O94952 628 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 PAEPP09466 180 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 CYP2C9P11712 490 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 SERPINB1P30740 379 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 NR2C2P49116 596 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 RPL10AP62906 217 aaKnown RBP8.63□□□□□ -1.03
VPS36-201ENST00000378060 CHRNB3Q05901 458 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 KRT33BQ14525 404 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 PCSK7Q16549 785 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 TIGD7Q6NT04 549 aaPredicted RBP8.63□□□□□ -1.03
VPS36-201ENST00000378060 ZBTB49Q6ZSB9 765 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 IRF2BP1Q8IU81 584 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 ZDHHC17Q8IUH5 632 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 PRELID2Q8N945 189 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 SGF29Q96ES7 293 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 DCUN1D1Q96GG9 259 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 ZFRQ96KR1 1074 aaKnown RBP8.63□□□□□ -1.03
VPS36-201ENST00000378060 ZNF184Q99676 751 aaPredicted RBP8.63□□□□□ -1.03
VPS36-201ENST00000378060 CHST7Q9NS84 486 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 DNPEPQ9ULA0 475 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 RUVBL2Q9Y230 463 aaKnown RBP8.63□□□□□ -1.03
VPS36-201ENST00000378060 HNRNPCL2B2RXH8 293 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 RBAK-RBAKDNI3L0D1 243 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 CYP1A2P05177 515 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 FAM58BPP0C7Q3 252 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 PTPN7P35236 360 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 ZC3H12BQ5HYM0 836 aaKnown RBP8.63□□□□□ -1.03
VPS36-201ENST00000378060 UGT3A1Q6NUS8 523 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 EMC1Q8N766 993 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 FAM162AQ96A26 154 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 TEPSINQ96N21 525 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 TRAPPC9Q96Q05 1148 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 SH3GL2Q99962 352 aa8.63□□□□□ -1.03
VPS36-201ENST00000378060 IDI2Q9BXS1 227 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms