RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 KIAA1522Q9P206 1035 aaPredicted RBP17.92■□□□□ 0.46
VPS29-204ENST00000548259 SRPRBQ9Y5M8 271 aaKnown RBP17.92■□□□□ 0.46
VPS29-204ENST00000548259 PTPRJQ12913 1337 aa17.92■□□□□ 0.46
VPS29-204ENST00000548259 FRMD3A2A2Y4 597 aa17.91■□□□□ 0.46
VPS29-204ENST00000548259 CLDN5O00501 218 aa17.91■□□□□ 0.46
VPS29-204ENST00000548259 TYRP14679 529 aa17.91■□□□□ 0.46
VPS29-204ENST00000548259 TRIM21P19474 475 aaKnown RBP17.91■□□□□ 0.46
VPS29-204ENST00000548259 ATICP31939 592 aa17.91■□□□□ 0.46
VPS29-204ENST00000548259 ZNF132P52740 706 aa17.91■□□□□ 0.46
VPS29-204ENST00000548259 SLC5A3P53794 718 aa17.91■□□□□ 0.46
VPS29-204ENST00000548259 CACNA2D1P54289 1103 aa17.91■□□□□ 0.46
VPS29-204ENST00000548259 SNRNP35Q16560 246 aaKnown RBP17.91■□□□□ 0.46
VPS29-204ENST00000548259 USP49Q70CQ1 688 aa17.91■□□□□ 0.46
VPS29-204ENST00000548259 HTR3DQ70Z44 454 aa17.91■□□□□ 0.46
VPS29-204ENST00000548259 CADM4Q8NFZ8 388 aa17.91■□□□□ 0.46
VPS29-204ENST00000548259 SMARCD1Q96GM5 515 aa17.91■□□□□ 0.46
VPS29-204ENST00000548259 MRGPRX1Q96LB2 322 aa17.91■□□□□ 0.46
VPS29-204ENST00000548259 CCSER2Q9H7U1 834 aa17.91■□□□□ 0.46
VPS29-204ENST00000548259 SCUBE2Q9NQ36 999 aa17.91■□□□□ 0.46
VPS29-204ENST00000548259 TLR8Q9NR97 1041 aaKnown RBP17.91■□□□□ 0.46
VPS29-204ENST00000548259 NXF1Q9UBU9 619 aaKnown RBP17.91■□□□□ 0.46
VPS29-204ENST00000548259 PLXND1Q9Y4D7 1925 aa17.9■□□□□ 0.46
VPS29-204ENST00000548259 NPC1O15118 1278 aa17.9■□□□□ 0.46
VPS29-204ENST00000548259 TLR5O60602 858 aa17.9■□□□□ 0.46
VPS29-204ENST00000548259 PHACTR2O75167 634 aa17.9■□□□□ 0.46
VPS29-204ENST00000548259 STAU1O95793 577 aaKnown RBP17.9■□□□□ 0.46
VPS29-204ENST00000548259 ZNF883P0CG24 379 aa17.9■□□□□ 0.46
VPS29-204ENST00000548259 OXTRP30559 389 aa17.9■□□□□ 0.46
VPS29-204ENST00000548259 DGKGP49619 791 aa17.9■□□□□ 0.46
VPS29-204ENST00000548259 SUZ12Q15022 739 aaKnown RBP17.9■□□□□ 0.46
VPS29-204ENST00000548259 METTL3Q86U44 580 aaKnown RBP17.9■□□□□ 0.46
VPS29-204ENST00000548259 MIB1Q86YT6 1006 aa17.9■□□□□ 0.46
VPS29-204ENST00000548259 ENGASEQ8NFI3 743 aa17.9■□□□□ 0.46
VPS29-204ENST00000548259 SCAMP5Q8TAC9 235 aa17.9■□□□□ 0.46
VPS29-204ENST00000548259 HNRNPLLQ8WVV9 542 aaKnown RBP17.9■□□□□ 0.46
VPS29-204ENST00000548259 DNASE2BQ8WZ79 361 aa17.9■□□□□ 0.46
VPS29-204ENST00000548259 CGRRF1Q99675 332 aa17.9■□□□□ 0.46
VPS29-204ENST00000548259 MIR1-1HGQ9H1L0 117 aa17.9■□□□□ 0.46
VPS29-204ENST00000548259 DPEP3Q9H4B8 488 aa17.9■□□□□ 0.46
VPS29-204ENST00000548259 GMIPQ9P107 970 aa17.9■□□□□ 0.46
VPS29-204ENST00000548259 PCOLCE2Q9UKZ9 415 aa17.9■□□□□ 0.46
VPS29-204ENST00000548259 PTPRDP23468 1912 aa17.9■□□□□ 0.46
VPS29-204ENST00000548259 TNRC6BQ9UPQ9 1833 aaKnown RBP17.89■□□□□ 0.45
VPS29-204ENST00000548259 CST3P01034 146 aaPredicted RBP17.89■□□□□ 0.45
VPS29-204ENST00000548259 NCAM1P13591 858 aa17.89■□□□□ 0.45
VPS29-204ENST00000548259 ATP5C1P36542 298 aaKnown RBP17.89■□□□□ 0.45
VPS29-204ENST00000548259 MATKP42679 507 aa17.89■□□□□ 0.45
VPS29-204ENST00000548259 PSMD6Q15008 389 aa17.89■□□□□ 0.45
VPS29-204ENST00000548259 TPGS1Q6ZTW0 290 aa17.89■□□□□ 0.45
VPS29-204ENST00000548259 FAM35AQ86V20 835 aa17.89■□□□□ 0.45
VPS29-204ENST00000548259 GALNT15Q8N3T1 639 aa17.89■□□□□ 0.45
VPS29-204ENST00000548259 RDH13Q8NBN7 331 aa17.89■□□□□ 0.45
VPS29-204ENST00000548259 MDM1Q8TC05 714 aa17.89■□□□□ 0.45
VPS29-204ENST00000548259 UCMAQ8WVF2 138 aa17.89■□□□□ 0.45
VPS29-204ENST00000548259 CCDC127Q96BQ5 260 aa17.89■□□□□ 0.45
VPS29-204ENST00000548259 TOE1Q96GM8 510 aaKnown RBP17.89■□□□□ 0.45
VPS29-204ENST00000548259 KCNK16Q96T55 309 aa17.89■□□□□ 0.45
VPS29-204ENST00000548259 ACOX2Q99424 681 aa17.89■□□□□ 0.45
VPS29-204ENST00000548259 PRDM16Q9HAZ2 1276 aa17.89■□□□□ 0.45
VPS29-204ENST00000548259 TMEM30AQ9NV96 361 aa17.89■□□□□ 0.45
VPS29-204ENST00000548259 CACNA2D2Q9NY47 1150 aa17.89■□□□□ 0.45
VPS29-204ENST00000548259 IL37Q9NZH6 218 aa17.89■□□□□ 0.45
VPS29-204ENST00000548259 MARK1Q9P0L2 795 aa17.89■□□□□ 0.45
VPS29-204ENST00000548259 DKK4Q9UBT3 224 aa17.89■□□□□ 0.45
VPS29-204ENST00000548259 RAXQ9Y2V3 346 aa17.89■□□□□ 0.45
VPS29-204ENST00000548259 TRIM24O15164 1050 aa17.88■□□□□ 0.45
VPS29-204ENST00000548259 EIF3DO15371 548 aaKnown RBP eCLIP17.88■□□□□ 0.45
VPS29-204ENST00000548259 FLRT2O43155 660 aa17.88■□□□□ 0.45
VPS29-204ENST00000548259 SYNCRIPO60506 623 aaKnown RBP17.88■□□□□ 0.45
VPS29-204ENST00000548259 AP1G2O75843 785 aa17.88■□□□□ 0.45
VPS29-204ENST00000548259 ZDHHC11BP0C7U3 371 aa17.88■□□□□ 0.45
VPS29-204ENST00000548259 PDCP20941 246 aa17.88■□□□□ 0.45
VPS29-204ENST00000548259 MAOBP27338 520 aa17.88■□□□□ 0.45
VPS29-204ENST00000548259 SNRPFP62306 86 aaKnown RBP17.88■□□□□ 0.45
VPS29-204ENST00000548259 LRIG1Q96JA1 1093 aa17.88■□□□□ 0.45
VPS29-204ENST00000548259 GAREM1Q9H706 876 aa17.88■□□□□ 0.45
VPS29-204ENST00000548259 CD248Q9HCU0 757 aa17.88■□□□□ 0.45
VPS29-204ENST00000548259 TM7SF3Q9NS93 570 aa17.88■□□□□ 0.45
VPS29-204ENST00000548259 FBXO2Q9UK22 296 aaPredicted RBP17.88■□□□□ 0.45
VPS29-204ENST00000548259 RAD54BQ9Y620 910 aa17.88■□□□□ 0.45
VPS29-204ENST00000548259 FAM92AA1XBS5 289 aa17.87■□□□□ 0.45
VPS29-204ENST00000548259 VPS37CA5D8V6 355 aaPredicted RBP17.87■□□□□ 0.45
VPS29-204ENST00000548259 PRRT4C9JH25 899 aa17.87■□□□□ 0.45
VPS29-204ENST00000548259 BCAT2O15382 392 aaPredicted RBP17.87■□□□□ 0.45
VPS29-204ENST00000548259 CBFA2T3O75081 653 aa17.87■□□□□ 0.45
VPS29-204ENST00000548259 ACADMP11310 421 aa17.87■□□□□ 0.45
VPS29-204ENST00000548259 P4HA1P13674 534 aa17.87■□□□□ 0.45
VPS29-204ENST00000548259 AMPD3Q01432 767 aa17.87■□□□□ 0.45
VPS29-204ENST00000548259 TMPRSS7Q7RTY8 843 aa17.87■□□□□ 0.45
VPS29-204ENST00000548259 TADA2BQ86TJ2 420 aa17.87■□□□□ 0.45
VPS29-204ENST00000548259 ZCCHC9Q8N567 271 aaKnown RBP17.87■□□□□ 0.45
VPS29-204ENST00000548259 ERLEC1Q96DZ1 483 aa17.87■□□□□ 0.45
VPS29-204ENST00000548259 GPR174Q9BXC1 333 aa17.87■□□□□ 0.45
VPS29-204ENST00000548259 FGFBP2Q9BYJ0 223 aa17.87■□□□□ 0.45
VPS29-204ENST00000548259 ITM2CQ9NQX7 267 aa17.87■□□□□ 0.45
VPS29-204ENST00000548259 WSB2Q9NYS7 404 aaPredicted RBP17.87■□□□□ 0.45
VPS29-204ENST00000548259 HCN2Q9UL51 889 aa17.87■□□□□ 0.45
VPS29-204ENST00000548259 PCDHGB2Q9Y5G2 931 aa17.87■□□□□ 0.45
VPS29-204ENST00000548259 CLIC4Q9Y696 253 aa17.87■□□□□ 0.45
VPS29-204ENST00000548259 PCDH15Q96QU1 1955 aa17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 150.1 ms