RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 TBKBP1A7MCY6 615 aa14.38□□□□□ -0.11
PTPRF-202ENST00000372405 PARNO95453 639 aaKnown RBP14.38□□□□□ -0.11
PTPRF-202ENST00000372405 CYP2F1P24903 491 aa14.38□□□□□ -0.11
PTPRF-202ENST00000372405 KLRC2P26717 231 aa14.38□□□□□ -0.11
PTPRF-202ENST00000372405 NOS2P35228 1153 aa14.38□□□□□ -0.11
PTPRF-202ENST00000372405 GJA8P48165 433 aa14.38□□□□□ -0.11
PTPRF-202ENST00000372405 SULT1E1P49888 294 aa14.38□□□□□ -0.11
PTPRF-202ENST00000372405 VCPP55072 806 aaKnown RBP14.38□□□□□ -0.11
PTPRF-202ENST00000372405 MAPRE1Q15691 268 aaKnown RBP14.38□□□□□ -0.11
PTPRF-202ENST00000372405 VARS2Q5ST30 1063 aaKnown RBP14.38□□□□□ -0.11
PTPRF-202ENST00000372405 ERMARDQ5T6L9 678 aa14.38□□□□□ -0.11
PTPRF-202ENST00000372405 FAM43BQ6ZT52 329 aaPredicted RBP14.38□□□□□ -0.11
PTPRF-202ENST00000372405 SYDE1Q6ZW31 735 aaPredicted RBP14.38□□□□□ -0.11
PTPRF-202ENST00000372405 TMC3Q7Z5M5 1100 aa14.38□□□□□ -0.11
PTPRF-202ENST00000372405 RFX6Q8HWS3 928 aa14.38□□□□□ -0.11
PTPRF-202ENST00000372405 IQCKQ8N0W5 287 aa14.38□□□□□ -0.11
PTPRF-202ENST00000372405 ART4Q93070 314 aa14.38□□□□□ -0.11
PTPRF-202ENST00000372405 FMO2Q99518 471 aa14.38□□□□□ -0.11
PTPRF-202ENST00000372405 FEZ2Q9UHY8 353 aaPredicted RBP14.38□□□□□ -0.11
PTPRF-202ENST00000372405 NT5C1B-RDH14C9J2C7 533 aa14.37□□□□□ -0.11
PTPRF-202ENST00000372405 TRAPPC3O43617 180 aa14.37□□□□□ -0.11
PTPRF-202ENST00000372405 SYF2O95926 243 aaKnown RBP14.37□□□□□ -0.11
PTPRF-202ENST00000372405 GAS8O95995 478 aa14.37□□□□□ -0.11
PTPRF-202ENST00000372405 ZBED1O96006 694 aa14.37□□□□□ -0.11
PTPRF-202ENST00000372405 HSPA8P11142 646 aaKnown RBP14.37□□□□□ -0.11
PTPRF-202ENST00000372405 ITGB8P26012 769 aa14.37□□□□□ -0.11
PTPRF-202ENST00000372405 L1CAMP32004 1257 aa14.37□□□□□ -0.11
PTPRF-202ENST00000372405 GGCXP38435 758 aa14.37□□□□□ -0.11
PTPRF-202ENST00000372405 MRPL58Q14197 206 aaKnown RBP14.37□□□□□ -0.11
PTPRF-202ENST00000372405 PDK2Q15119 407 aa14.37□□□□□ -0.11
PTPRF-202ENST00000372405 DPYSL2Q16555 572 aa14.37□□□□□ -0.11
PTPRF-202ENST00000372405 LRRC26Q2I0M4 334 aa14.37□□□□□ -0.11
PTPRF-202ENST00000372405 SLC39A12Q504Y0 691 aa14.37□□□□□ -0.11
PTPRF-202ENST00000372405 FAM131BQ86XD5 332 aa14.37□□□□□ -0.11
PTPRF-202ENST00000372405 ALLCQ8N6M5 410 aa14.37□□□□□ -0.11
PTPRF-202ENST00000372405 PQLC3Q8N755 202 aa14.37□□□□□ -0.11
PTPRF-202ENST00000372405 BCL7CQ8WUZ0 217 aaPredicted RBP14.37□□□□□ -0.11
PTPRF-202ENST00000372405 RIN2Q8WYP3 895 aaPredicted RBP14.37□□□□□ -0.11
PTPRF-202ENST00000372405 RNF157Q96PX1 679 aa14.37□□□□□ -0.11
PTPRF-202ENST00000372405 NCAPGQ9BPX3 1015 aa14.37□□□□□ -0.11
PTPRF-202ENST00000372405 C10orf88Q9H8K7 445 aa14.37□□□□□ -0.11
PTPRF-202ENST00000372405 ASIC3Q9UHC3 531 aa14.37□□□□□ -0.11
PTPRF-202ENST00000372405 DRG1Q9Y295 367 aaKnown RBP14.37□□□□□ -0.11
PTPRF-202ENST00000372405 APOC4-APOC2K7ER74 178 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 SYN3O14994 580 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 APOC2P02655 101 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 ALDH2P05091 517 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 ITGAVP06756 1048 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 GALTP07902 379 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 OAS2P29728 719 aaKnown RBP14.36□□□□□ -0.11
PTPRF-202ENST00000372405 VPS41P49754 854 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 KRT81Q14533 505 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 FAM171A1Q5VUB5 890 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 PM20D1Q6GTS8 502 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 RHBDF2Q6PJF5 856 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 NPNTQ6UXI9 565 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 PCDH19Q8TAB3 1148 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 SCAMP5Q8TAC9 235 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 FAF2Q96CS3 445 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 PAWRQ96IZ0 340 aaKnown RBP14.36□□□□□ -0.11
PTPRF-202ENST00000372405 TMEM121Q9BTD3 319 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 PNPLA8Q9NP80 782 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 TMPRSS4Q9NRS4 437 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 PIGVQ9NUD9 493 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 TMEM39AQ9NV64 488 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 AP4E1Q9UPM8 1137 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 ZNF148Q9UQR1 794 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 USP3Q9Y6I4 520 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 MYO16Q9Y6X6 1858 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 GOLGA6BA6NDN3 693 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 TNFRSF10BO14763 440 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 HOXA2O43364 376 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 PPFIA2O75334 1257 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 KRT14P02533 472 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 LTFP02788 710 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 ZSCAN5DPP0CG00 497 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 ETS1P14921 441 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 DESP17661 470 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 FGFR3P22607 806 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 HSD17B3P37058 310 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 DHX9Q08211 1270 aaKnown RBP14.36□□□□□ -0.11
PTPRF-202ENST00000372405 ANKRD20A8PQ5CZ79 823 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 SPATA2LQ8IUW3 424 aaPredicted RBP14.36□□□□□ -0.11
PTPRF-202ENST00000372405 PYROXD2Q8N2H3 581 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 PLD5Q8N7P1 536 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 ADAM32Q8TC27 787 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 ZIM3Q96PE6 472 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 KCTD15Q96SI1 283 aaPredicted RBP14.36□□□□□ -0.11
PTPRF-202ENST00000372405 WHRNQ9P202 907 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 FAN1Q9Y2M0 1017 aa14.36□□□□□ -0.11
PTPRF-202ENST00000372405 SYNJ2BP-COX16A0A087WUM0 186 aa14.35□□□□□ -0.11
PTPRF-202ENST00000372405 I6L893 689 aaPredicted RBP14.35□□□□□ -0.11
PTPRF-202ENST00000372405 M0QYT0 321 aa14.35□□□□□ -0.11
PTPRF-202ENST00000372405 UPP2O95045 317 aa14.35□□□□□ -0.11
PTPRF-202ENST00000372405 AMHP03971 560 aa14.35□□□□□ -0.11
PTPRF-202ENST00000372405 CLTBP09497 229 aa14.35□□□□□ -0.11
PTPRF-202ENST00000372405 PGFP49763 221 aa14.35□□□□□ -0.11
PTPRF-202ENST00000372405 GDF10P55107 478 aa14.35□□□□□ -0.11
PTPRF-202ENST00000372405 PPP6R3Q5H9R7 873 aaPredicted RBP14.35□□□□□ -0.11
PTPRF-202ENST00000372405 FUT10Q6P4F1 479 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 100.1 ms