RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 FCHO2Q0JRZ9 810 aa14.45□□□□□ -0.1
CCDC88A-201ENST00000263630 SCARA3Q6AZY7 606 aa14.45□□□□□ -0.1
CCDC88A-201ENST00000263630 KIF28PB7ZC32 967 aa14.45□□□□□ -0.1
CCDC88A-201ENST00000263630 ASNSP08243 561 aa14.45□□□□□ -0.1
CCDC88A-201ENST00000263630 PTPN7P35236 360 aa14.45□□□□□ -0.1
CCDC88A-201ENST00000263630 CHRNDQ07001 517 aa14.45□□□□□ -0.1
CCDC88A-201ENST00000263630 ALG11Q2TAA5 492 aa14.45□□□□□ -0.1
CCDC88A-201ENST00000263630 ZNF284Q2VY69 593 aa14.45□□□□□ -0.1
CCDC88A-201ENST00000263630 ZNF579Q8NAF0 562 aaKnown RBP14.45□□□□□ -0.1
CCDC88A-201ENST00000263630 PNMA8BQ9ULN7 279 aaPredicted RBP14.45□□□□□ -0.1
CCDC88A-201ENST00000263630 ATP9AO75110 1047 aa14.45□□□□□ -0.1
CCDC88A-201ENST00000263630 AP1S1P61966 158 aa14.45□□□□□ -0.1
CCDC88A-201ENST00000263630 PRMT9Q6P2P2 845 aa14.45□□□□□ -0.1
CCDC88A-201ENST00000263630 RBM15Q96T37 977 aaKnown RBP eCLIP14.45□□□□□ -0.12e-12■□□□□ 9
CCDC88A-201ENST00000263630 NLNQ9BYT8 704 aa14.45□□□□□ -0.1
CCDC88A-201ENST00000263630 ZNF112Q9UJU3 913 aa14.45□□□□□ -0.1
CCDC88A-201ENST00000263630 P4HA2O15460 535 aa14.45□□□□□ -0.1
CCDC88A-201ENST00000263630 SCGNO76038 276 aa14.45□□□□□ -0.1
CCDC88A-201ENST00000263630 PIGSQ96S52 555 aa14.45□□□□□ -0.1
CCDC88A-201ENST00000263630 KCNH4Q9UQ05 1017 aa14.45□□□□□ -0.1
CCDC88A-201ENST00000263630 CHRM3P20309 590 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 POU1F1P28069 291 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 C3orf62Q6ZUJ4 267 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 STARD13Q9Y3M8 1113 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 SYNJ1O43426 1573 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 ANKRD65E5RJM6 399 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 MYL12BO14950 172 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 TRAF3Q13114 568 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 C1orf54Q8WWF1 131 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 CCDC162PA2VCL2 907 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 TRIM49BA6NDI0 452 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 TRIM49D1C9J1S8 452 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 LBPP18428 481 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 ACADSBP45954 432 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 ZCCHC7Q8N3Z6 543 aaKnown RBP14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 TIPINQ9BVW5 301 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 TRIT1Q9H3H1 467 aaKnown RBP14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 ITGA9Q13797 1035 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 GRAMD1CQ8IYS0 662 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 CAMKK1Q8N5S9 505 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 SETD9Q8NE22 299 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 RMDN3Q96TC7 470 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 EDC4Q6P2E9 1401 aaKnown RBP14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 TADA2AO75478 443 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 CCNA2P20248 432 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 RFX3P48380 749 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 PYHIN1Q6K0P9 492 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 PPP1R18Q6NYC8 613 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 SPIRE2Q8WWL2 714 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 RPAP1Q9BWH6 1393 aaPredicted RBP14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 TEX14Q8IWB6 1497 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 KAT6AQ92794 2004 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 ATP6V1B2P21281 511 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 TRAF2Q12933 501 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 POLD3Q15054 466 aaPredicted RBP14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 ZNF671Q8TAW3 534 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 CRLS1Q9UJA2 301 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 FEM1BQ9UK73 627 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 TPRKBQ9Y3C4 175 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 PRRG1O14668 218 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 FAM20AQ96MK3 541 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 ZBTB39O15060 712 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 KPNA6O60684 536 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 FUT11Q495W5 492 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 C1orf50Q9BV19 199 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 LIMA1Q9UHB6 759 aaKnown RBP14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 CTTNBP2Q8WZ74 1663 aa14.44□□□□□ -0.1
CCDC88A-201ENST00000263630 FBLN1P23142 703 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 ARHGAP15Q53QZ3 475 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 LPCAT2Q7L5N7 544 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 PIGOQ8TEQ8 1089 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 PABPC5Q96DU9 382 aaKnown RBP14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 ACAD9Q9H845 621 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 PPP2R3BQ9Y5P8 575 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 USP19O94966 1318 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 KLHL41O60662 606 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 CYP2D6P10635 497 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 EIF2AK2P19525 551 aaKnown RBP14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 CBX5P45973 191 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 CCNIQ14094 377 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 NAPEPLDQ6IQ20 393 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 RPTNQ6XPR3 784 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 CRELD1Q96HD1 420 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 TMEM237Q96Q45 408 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 CCDC3Q9BQI4 270 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 DDX47Q9H0S4 455 aaKnown RBP14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 AHSPQ9NZD4 102 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 TMA7Q9Y2S6 64 aaKnown RBP14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 EEF2KO00418 725 aaKnown RBP14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 TIMM44O43615 452 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 A1BGP04217 495 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 PTH1RQ03431 593 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 DYRK1BQ9Y463 629 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 EFNA5P52803 228 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 ZNF211Q13398 564 aaPredicted RBP14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 FBXO31Q5XUX0 539 aaPredicted RBP14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 RORBQ92753 470 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 E2F7Q96AV8 911 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 NRDE2Q9H7Z3 1164 aa14.43□□□□□ -0.1
CCDC88A-201ENST00000263630 CCDC182A6NF36 153 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms