RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 USP17L6PQ6QN14 398 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 ITIH6Q6UXX5 1313 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 KDM7AQ6ZMT4 941 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 JAMLQ86YT9 394 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 METTL13Q8N6R0 699 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 GBP7Q8N8V2 638 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-203ENST00000547825 USP38Q8NB14 1042 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 WDR19Q8NEZ3 1342 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.8□□□□□ -1.48
LIMA1-203ENST00000547825 CCHCR1Q8TD31 782 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 SNRNP27Q8WVK2 155 aaKnown RBP5.8□□□□□ -1.48
LIMA1-203ENST00000547825 IMPG2Q9BZV3 1241 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 SAYSD1Q9NPB0 183 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 ANLNQ9NQW6 1124 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 CEP72Q9P209 647 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 PPARGC1AQ9UBK2 798 aaKnown RBP5.8□□□□□ -1.48
LIMA1-203ENST00000547825 MAGED2Q9UNF1 606 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-203ENST00000547825 PLAGL2Q9UPG8 496 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 ZNF711Q9Y462 761 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 USP15Q9Y4E8 981 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-203ENST00000547825 PPME1Q9Y570 386 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 MAD1L1Q9Y6D9 718 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 BZW2Q9Y6E2 419 aaKnown RBP5.8□□□□□ -1.48
LIMA1-203ENST00000547825 MYMKA6NI61 221 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 SGK1O00141 431 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 EDIL3O43854 480 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 UFL1O94874 794 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 FERP16591 822 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 MX2P20592 715 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 MAPK4P31152 587 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 LRRC63Q05C16 580 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 DEUP1Q05D60 604 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 MOGSQ13724 837 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 SLMAPQ14BN4 828 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 SLC18A3Q16572 532 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 PFKFB3Q16875 520 aaPredicted RBP5.8□□□□□ -1.48
LIMA1-203ENST00000547825 ACCSLQ4AC99 568 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 FKBP1CQ5VVH2 108 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 HGSNATQ68CP4 663 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 UNC13DQ70J99 1090 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 RAVER1Q8IY67 606 aaKnown RBP5.8□□□□□ -1.48
LIMA1-203ENST00000547825 NIM1KQ8IY84 436 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 FBXO25Q8TCJ0 367 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 TEKT4Q8WW24 435 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 FGD4Q96M96 766 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 AK8Q96MA6 479 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 TLR10Q9BXR5 811 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 MAK16Q9BXY0 300 aaKnown RBP5.8□□□□□ -1.48
LIMA1-203ENST00000547825 IRF2BPLQ9H1B7 796 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 ZNF112Q9UJU3 913 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 PCDHB10Q9UN67 800 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 PCDHGC4Q9Y5F7 938 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 CORINQ9Y5Q5 1042 aa5.8□□□□□ -1.48
LIMA1-203ENST00000547825 WNT10BO00744 389 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 CFLARO15519 480 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 KLRC4O43908 158 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 FTLP02792 175 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-203ENST00000547825 GNAT1P11488 350 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 PLS3P13797 630 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 GALCP54803 685 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 IFI35P80217 286 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-203ENST00000547825 MECOMQ03112 1051 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 BFSP1Q12934 665 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 DRAP1Q14919 205 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-203ENST00000547825 APOBEC3HQ6NTF7 200 aaKnown RBP5.79□□□□□ -1.48
LIMA1-203ENST00000547825 SFR1Q86XK3 245 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 ZNF507Q8TCN5 953 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 ZDHHC15Q96MV8 337 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 PHF20Q9BVI0 1012 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 DBNDD1Q9H9R9 158 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 CYP4F11Q9HBI6 524 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 VCX3AQ9NNX9 186 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 RHBDL2Q9NX52 303 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 DDX56Q9NY93 547 aaKnown RBP5.79□□□□□ -1.48
LIMA1-203ENST00000547825 STOML1Q9UBI4 398 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 ZFP69BQ9UJL9 534 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 HAO1Q9UJM8 370 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 PCDHAC2Q9Y5I4 1007 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 ADGRA2Q96PE1 1338 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 K7ENM7 598 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 MYCLP12524 364 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-203ENST00000547825 HOXA13P31271 388 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-203ENST00000547825 GCLMP48507 274 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 MYL7Q01449 175 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 CDR2Q01850 454 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 KDSRQ06136 332 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 KLC1Q07866 573 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 COASYQ13057 564 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 CTTNQ14247 550 aaKnown RBP5.79□□□□□ -1.48
LIMA1-203ENST00000547825 ANKRD20A8PQ5CZ79 823 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 NXNQ6DKJ4 435 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 VN1R5Q7Z5H4 357 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 CLEC10AQ8IUN9 316 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 RNF168Q8IYW5 571 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-203ENST00000547825 TMEM102Q8N9M5 508 aaPredicted RBP5.79□□□□□ -1.48
LIMA1-203ENST00000547825 RSAD2Q8WXG1 361 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 MXD3Q9BW11 206 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 LRRC3Q9BY71 257 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 PBX4Q9BYU1 374 aa5.79□□□□□ -1.48
LIMA1-203ENST00000547825 METTL14Q9HCE5 456 aaKnown RBP5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 80.6 ms