RNA–Protein interactions for RNA: ENST00000600888.2

CKS1BP3-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 3, humanhuman

BASIC

Gene CKS1BP3, Length 237 nt, Biotype processed pseudogene, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP3-201ENST00000600888 UBXN2BQ14CS0 331 aa4.64□□□□□ -1.67
CKS1BP3-201ENST00000600888 MIIPQ5JXC2 388 aa4.64□□□□□ -1.67
CKS1BP3-201ENST00000600888 ODR4Q5SWX8 454 aa4.64□□□□□ -1.67
CKS1BP3-201ENST00000600888 SEM1Q6ZVN7 128 aa4.64□□□□□ -1.67
CKS1BP3-201ENST00000600888 TTC7BQ86TV6 843 aa4.64□□□□□ -1.67
CKS1BP3-201ENST00000600888 CACTINQ8WUQ7 758 aaKnown RBP4.64□□□□□ -1.67
CKS1BP3-201ENST00000600888 TMX3Q96JJ7 454 aa4.64□□□□□ -1.67
CKS1BP3-201ENST00000600888 CLPTM1LQ96KA5 538 aa4.64□□□□□ -1.67
CKS1BP3-201ENST00000600888 MRGPRX4Q96LA9 322 aa4.64□□□□□ -1.67
CKS1BP3-201ENST00000600888 DMRTA2Q96SC8 542 aa4.64□□□□□ -1.67
CKS1BP3-201ENST00000600888 NUP88Q99567 741 aaPredicted RBP4.64□□□□□ -1.67
CKS1BP3-201ENST00000600888 ZNF747Q9BV97 191 aa4.64□□□□□ -1.67
CKS1BP3-201ENST00000600888 RHOBTB2Q9BYZ6 727 aa4.64□□□□□ -1.67
CKS1BP3-201ENST00000600888 EIF2B4Q9UI10 523 aaKnown RBP4.64□□□□□ -1.67
CKS1BP3-201ENST00000600888 ZNF180Q9UJW8 692 aa4.64□□□□□ -1.67
CKS1BP3-201ENST00000600888 SORCS3Q9UPU3 1222 aa4.64□□□□□ -1.67
CKS1BP3-201ENST00000600888 RUVBL1Q9Y265 456 aaKnown RBP4.64□□□□□ -1.67
CKS1BP3-201ENST00000600888 CFAP20Q9Y6A4 193 aaKnown RBP4.64□□□□□ -1.67
CKS1BP3-201ENST00000600888 CCDC7Q96M83 1385 aa4.64□□□□□ -1.67
CKS1BP3-201ENST00000600888 TRIM24O15164 1050 aa4.63□□□□□ -1.67
CKS1BP3-201ENST00000600888 FAM20BO75063 409 aa4.63□□□□□ -1.67
CKS1BP3-201ENST00000600888 SCAF4O95104 1147 aaKnown RBP4.63□□□□□ -1.67
CKS1BP3-201ENST00000600888 S100BP04271 92 aaPredicted RBP4.63□□□□□ -1.67
CKS1BP3-201ENST00000600888 CT47B1P0C2W7 299 aaPredicted RBP4.63□□□□□ -1.67
CKS1BP3-201ENST00000600888 METRNLQ641Q3 311 aa4.63□□□□□ -1.67
CKS1BP3-201ENST00000600888 ZNF529Q6P280 563 aa4.63□□□□□ -1.67
CKS1BP3-201ENST00000600888 USP45Q70EL2 814 aa4.63□□□□□ -1.67
CKS1BP3-201ENST00000600888 PLXDC1Q8IUK5 500 aa4.63□□□□□ -1.67
CKS1BP3-201ENST00000600888 RAVER1Q8IY67 606 aaKnown RBP4.63□□□□□ -1.67
CKS1BP3-201ENST00000600888 DRC7Q8IY82 874 aa4.63□□□□□ -1.67
CKS1BP3-201ENST00000600888 IFI44Q8TCB0 444 aa4.63□□□□□ -1.67
CKS1BP3-201ENST00000600888 CPT1CQ8TCG5 803 aa4.63□□□□□ -1.67
CKS1BP3-201ENST00000600888 NSUN6Q8TEA1 469 aaKnown RBP4.63□□□□□ -1.67
CKS1BP3-201ENST00000600888 JPH3Q8WXH2 748 aaPredicted RBP4.63□□□□□ -1.67
CKS1BP3-201ENST00000600888 CAMKK2Q96RR4 588 aa4.63□□□□□ -1.67
CKS1BP3-201ENST00000600888 DCLRE1CQ96SD1 692 aaKnown RBP4.63□□□□□ -1.67
CKS1BP3-201ENST00000600888 RTFDC1Q9BY42 306 aaPredicted RBP4.63□□□□□ -1.67
CKS1BP3-201ENST00000600888 PCGF6Q9BYE7 350 aa4.63□□□□□ -1.67
CKS1BP3-201ENST00000600888 VPS11Q9H270 941 aa4.63□□□□□ -1.67
CKS1BP3-201ENST00000600888 ZIM2Q9NZV7 527 aa4.63□□□□□ -1.67
CKS1BP3-201ENST00000600888 CALCOCO1Q9P1Z2 691 aa4.63□□□□□ -1.67
CKS1BP3-201ENST00000600888 PARD3Q8TEW0 1356 aa4.63□□□□□ -1.67
CKS1BP3-201ENST00000600888 NUP188Q5SRE5 1749 aa4.63□□□□□ -1.67
CKS1BP3-201ENST00000600888 LRP5O75197 1615 aa4.62□□□□□ -1.67
CKS1BP3-201ENST00000600888 NHSQ6T4R5 1651 aa4.62□□□□□ -1.67
CKS1BP3-201ENST00000600888 TCRBV7S2A1N4TA0A589 114 aa4.62□□□□□ -1.67
CKS1BP3-201ENST00000600888 AHRRA9YTQ3 701 aa4.62□□□□□ -1.67
CKS1BP3-201ENST00000600888 DIRC3C9JPN6 131 aa4.62□□□□□ -1.67
CKS1BP3-201ENST00000600888 PPM1GO15355 546 aaPredicted RBP4.62□□□□□ -1.67
CKS1BP3-201ENST00000600888 CHN2P52757 468 aa4.62□□□□□ -1.67
CKS1BP3-201ENST00000600888 ZNF280AP59817 542 aaPredicted RBP4.62□□□□□ -1.67
CKS1BP3-201ENST00000600888 RNASE9P60153 205 aaKnown RBP4.62□□□□□ -1.67
CKS1BP3-201ENST00000600888 CREMQ03060 361 aa4.62□□□□□ -1.67
CKS1BP3-201ENST00000600888 RAB39AQ14964 217 aa4.62□□□□□ -1.67
CKS1BP3-201ENST00000600888 ATP2B3Q16720 1220 aa4.62□□□□□ -1.67
CKS1BP3-201ENST00000600888 LSM12Q3MHD2 195 aaKnown RBP4.62□□□□□ -1.67
CKS1BP3-201ENST00000600888 DACT2Q5SW24 774 aa4.62□□□□□ -1.67
CKS1BP3-201ENST00000600888 FAM102AQ5T9C2 384 aaPredicted RBP4.62□□□□□ -1.67
CKS1BP3-201ENST00000600888 MED25Q71SY5 747 aa4.62□□□□□ -1.67
CKS1BP3-201ENST00000600888 UBE3BQ7Z3V4 1068 aa4.62□□□□□ -1.67
CKS1BP3-201ENST00000600888 CATIPQ7Z7H3 387 aa4.62□□□□□ -1.67
CKS1BP3-201ENST00000600888 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.62□□□□□ -1.67
CKS1BP3-201ENST00000600888 DCBLD1Q8N8Z6 715 aa4.62□□□□□ -1.67
CKS1BP3-201ENST00000600888 FAM193BQ96PV7 902 aaPredicted RBP4.62□□□□□ -1.67
CKS1BP3-201ENST00000600888 ZNF341Q9BYN7 854 aa4.62□□□□□ -1.67
CKS1BP3-201ENST00000600888 KRTAP4-7Q9BYR0 210 aa4.62□□□□□ -1.67
CKS1BP3-201ENST00000600888 GTPBP4Q9BZE4 634 aaKnown RBP4.62□□□□□ -1.67
CKS1BP3-201ENST00000600888 C11orf54Q9H0W9 315 aaPredicted RBP4.62□□□□□ -1.67
CKS1BP3-201ENST00000600888 CDH19Q9H159 772 aa4.62□□□□□ -1.67
CKS1BP3-201ENST00000600888 FBXO34Q9NWN3 711 aa4.62□□□□□ -1.67
CKS1BP3-201ENST00000600888 TRPM5Q9NZQ8 1165 aa4.62□□□□□ -1.67
CKS1BP3-201ENST00000600888 PNMA8BQ9ULN7 279 aaPredicted RBP4.62□□□□□ -1.67
CKS1BP3-201ENST00000600888 SHANK3Q9BYB0 1731 aa4.62□□□□□ -1.67
CKS1BP3-201ENST00000600888 KIF24Q5T7B8 1368 aa4.62□□□□□ -1.67
CKS1BP3-201ENST00000600888 OVOS2A0A0G2JMS6 1433 aa4.62□□□□□ -1.67
CKS1BP3-201ENST00000600888 BTAF1O14981 1849 aa4.61□□□□□ -1.67
CKS1BP3-201ENST00000600888 KIAA0391O15091 583 aaKnown RBP4.61□□□□□ -1.67
CKS1BP3-201ENST00000600888 FYB1O15117 783 aa4.61□□□□□ -1.67
CKS1BP3-201ENST00000600888 RFPL1O75677 317 aa4.61□□□□□ -1.67
CKS1BP3-201ENST00000600888 PEX11BO96011 259 aa4.61□□□□□ -1.67
CKS1BP3-201ENST00000600888 FXR1P51114 621 aaKnown RBP eCLIP4.61□□□□□ -1.67
CKS1BP3-201ENST00000600888 TLE1Q04724 770 aa4.61□□□□□ -1.67
CKS1BP3-201ENST00000600888 TUBA3CQ13748 450 aa4.61□□□□□ -1.67
CKS1BP3-201ENST00000600888 KHDC1Q4VXA5 237 aaKnown RBP4.61□□□□□ -1.67
CKS1BP3-201ENST00000600888 TUBA3EQ6PEY2 450 aa4.61□□□□□ -1.67
CKS1BP3-201ENST00000600888 CRIP3Q6Q6R5 217 aa4.61□□□□□ -1.67
CKS1BP3-201ENST00000600888 GADL1Q6ZQY3 521 aa4.61□□□□□ -1.67
CKS1BP3-201ENST00000600888 TOM1L2Q6ZVM7 507 aa4.61□□□□□ -1.67
CKS1BP3-201ENST00000600888 GDF7Q7Z4P5 450 aa4.61□□□□□ -1.67
CKS1BP3-201ENST00000600888 DEFB132Q7Z7B7 95 aa4.61□□□□□ -1.67
CKS1BP3-201ENST00000600888 IL17RDQ8NFM7 739 aa4.61□□□□□ -1.67
CKS1BP3-201ENST00000600888 IP6K1Q92551 441 aa4.61□□□□□ -1.67
CKS1BP3-201ENST00000600888 COG3Q96JB2 828 aa4.61□□□□□ -1.67
CKS1BP3-201ENST00000600888 PHACTR3Q96KR7 559 aa4.61□□□□□ -1.67
CKS1BP3-201ENST00000600888 NEU1Q99519 415 aa4.61□□□□□ -1.67
CKS1BP3-201ENST00000600888 VRK1Q99986 396 aaPredicted RBP4.61□□□□□ -1.67
CKS1BP3-201ENST00000600888 GSTO2Q9H4Y5 243 aa4.61□□□□□ -1.67
CKS1BP3-201ENST00000600888 ZNF768Q9H5H4 540 aaKnown RBP4.61□□□□□ -1.67
CKS1BP3-201ENST00000600888 CHST2Q9Y4C5 530 aa4.61□□□□□ -1.67
CKS1BP3-201ENST00000600888 SRCAPQ6ZRS2 3230 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms