RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 LEO1Q8WVC0 666 aaPredicted RBP20.91■□□□□ 0.94
USP40-207ENST00000450940 SCFD1Q8WVM8 642 aa20.91■□□□□ 0.94
USP40-207ENST00000450940 ELSPBP1Q96BH3 223 aa20.91■□□□□ 0.94
USP40-207ENST00000450940 KXD1Q9BQD3 176 aa20.91■□□□□ 0.94
USP40-207ENST00000450940 ASAH2Q9NR71 780 aa20.91■□□□□ 0.94
USP40-207ENST00000450940 ARHGEF3Q9NR81 526 aa20.91■□□□□ 0.94
USP40-207ENST00000450940 HSPBP1Q9NZL4 362 aa20.91■□□□□ 0.94
USP40-207ENST00000450940 CA14Q9ULX7 337 aa20.91■□□□□ 0.94
USP40-207ENST00000450940 SLC27A5Q9Y2P5 690 aa20.91■□□□□ 0.94
USP40-207ENST00000450940 ACTN4O43707 911 aaKnown RBP20.9■□□□□ 0.94
USP40-207ENST00000450940 CMA1P23946 247 aa20.9■□□□□ 0.94
USP40-207ENST00000450940 POLR2BP30876 1174 aaKnown RBP20.9■□□□□ 0.94
USP40-207ENST00000450940 ALDH1A3P47895 512 aa20.9■□□□□ 0.94
USP40-207ENST00000450940 EPHB3P54753 998 aa20.9■□□□□ 0.94
USP40-207ENST00000450940 STARD6P59095 220 aa20.9■□□□□ 0.94
USP40-207ENST00000450940 CUL4BQ13620 913 aa20.9■□□□□ 0.94
USP40-207ENST00000450940 SCARA3Q6AZY7 606 aa20.9■□□□□ 0.94
USP40-207ENST00000450940 TANGO2Q6ICL3 276 aa20.9■□□□□ 0.94
USP40-207ENST00000450940 LRRTM3Q86VH5 581 aa20.9■□□□□ 0.94
USP40-207ENST00000450940 TMC8Q8IU68 726 aa20.9■□□□□ 0.94
USP40-207ENST00000450940 CBWD2Q8IUF1 395 aa20.9■□□□□ 0.94
USP40-207ENST00000450940 C2orf15Q8WU43 125 aaKnown RBP20.9■□□□□ 0.94
USP40-207ENST00000450940 PLA2G2FQ9BZM2 168 aa20.9■□□□□ 0.94
USP40-207ENST00000450940 BLZF1Q9H2G9 400 aa20.9■□□□□ 0.94
USP40-207ENST00000450940 TBC1D17Q9HA65 648 aa20.9■□□□□ 0.94
USP40-207ENST00000450940 AGPAT3Q9NRZ7 376 aa20.9■□□□□ 0.94
USP40-207ENST00000450940 INTS13Q9NVM9 706 aa20.9■□□□□ 0.94
USP40-207ENST00000450940 GDAP2Q9NXN4 497 aa20.9■□□□□ 0.94
USP40-207ENST00000450940 SIX4Q9UIU6 781 aa20.9■□□□□ 0.94
USP40-207ENST00000450940 AFMP43652 599 aa20.89■□□□□ 0.93
USP40-207ENST00000450940 TUFMP49411 452 aaKnown RBP20.89■□□□□ 0.93
USP40-207ENST00000450940 RBP5P82980 135 aa20.89■□□□□ 0.93
USP40-207ENST00000450940 PFKPQ01813 784 aa20.89■□□□□ 0.93
USP40-207ENST00000450940 SLC39A12Q504Y0 691 aa20.89■□□□□ 0.93
USP40-207ENST00000450940 FAM78AQ5JUQ0 283 aa20.89■□□□□ 0.93
USP40-207ENST00000450940 CCDC105Q8IYK2 499 aa20.89■□□□□ 0.93
USP40-207ENST00000450940 CSGALNACT2Q8N6G5 542 aa20.89■□□□□ 0.93
USP40-207ENST00000450940 TTC9BQ8N6N2 239 aa20.89■□□□□ 0.93
USP40-207ENST00000450940 ASB16Q96NS5 453 aa20.89■□□□□ 0.93
USP40-207ENST00000450940 DDX23Q9BUQ8 820 aaKnown RBP20.89■□□□□ 0.93
USP40-207ENST00000450940 GPR88Q9GZN0 384 aa20.89■□□□□ 0.93
USP40-207ENST00000450940 TRPV4Q9HBA0 871 aa20.89■□□□□ 0.93
USP40-207ENST00000450940 SERTAD1Q9UHV2 236 aa20.89■□□□□ 0.93
USP40-207ENST00000450940 HPSEQ9Y251 543 aa20.89■□□□□ 0.93
USP40-207ENST00000450940 PTPRJQ12913 1337 aa20.88■□□□□ 0.93
USP40-207ENST00000450940 FAM237AA0A1B0GTK4 181 aa20.88■□□□□ 0.93
USP40-207ENST00000450940 KLRC4O43908 158 aa20.88■□□□□ 0.93
USP40-207ENST00000450940 MYL4P12829 197 aa20.88■□□□□ 0.93
USP40-207ENST00000450940 MRE11P49959 708 aa20.88■□□□□ 0.93
USP40-207ENST00000450940 DNAJB7Q7Z6W7 309 aaPredicted RBP20.88■□□□□ 0.93
USP40-207ENST00000450940 ALYREFQ86V81 257 aaKnown RBP20.88■□□□□ 0.93
USP40-207ENST00000450940 C12orf56Q8IXR9 622 aa20.88■□□□□ 0.93
USP40-207ENST00000450940 CEP57L1Q8IYX8 460 aa20.88■□□□□ 0.93
USP40-207ENST00000450940 TMEM86AQ8N2M4 240 aa20.88■□□□□ 0.93
USP40-207ENST00000450940 PDCL2Q8N4E4 241 aa20.88■□□□□ 0.93
USP40-207ENST00000450940 SHKBP1Q8TBC3 707 aa20.88■□□□□ 0.93
USP40-207ENST00000450940 SPATA18Q8TC71 538 aa20.88■□□□□ 0.93
USP40-207ENST00000450940 SPPL2BQ8TCT7 592 aa20.88■□□□□ 0.93
USP40-207ENST00000450940 PSMG2Q969U7 264 aa20.88■□□□□ 0.93
USP40-207ENST00000450940 PAGE5Q96GU1 130 aa20.88■□□□□ 0.93
USP40-207ENST00000450940 SHDQ96IW2 340 aa20.88■□□□□ 0.93
USP40-207ENST00000450940 FAM84AQ96KN4 292 aa20.88■□□□□ 0.93
USP40-207ENST00000450940 ZSWIM3Q96MP5 696 aa20.88■□□□□ 0.93
USP40-207ENST00000450940 PHOX2BQ99453 314 aa20.88■□□□□ 0.93
USP40-207ENST00000450940 MTMR12Q9C0I1 747 aa20.88■□□□□ 0.93
USP40-207ENST00000450940 CGNQ9P2M7 1197 aaKnown RBP20.88■□□□□ 0.93
USP40-207ENST00000450940 USP25Q9UHP3 1055 aa20.88■□□□□ 0.93
USP40-207ENST00000450940 L1RE1Q9UN81 338 aa20.88■□□□□ 0.93
USP40-207ENST00000450940 H0Y858 1186 aa20.87■□□□□ 0.93
USP40-207ENST00000450940 TMEM191BP0C7N4 346 aa20.87■□□□□ 0.93
USP40-207ENST00000450940 KRT85P78386 507 aa20.87■□□□□ 0.93
USP40-207ENST00000450940 PRKCQQ04759 706 aa20.87■□□□□ 0.93
USP40-207ENST00000450940 DUOXA2Q1HG44 320 aa20.87■□□□□ 0.93
USP40-207ENST00000450940 SLC44A4Q53GD3 710 aa20.87■□□□□ 0.93
USP40-207ENST00000450940 LIMS2Q7Z4I7 341 aa20.87■□□□□ 0.93
USP40-207ENST00000450940 GRAMD1CQ8IYS0 662 aa20.87■□□□□ 0.93
USP40-207ENST00000450940 DCP1BQ8IZD4 617 aaKnown RBP20.87■□□□□ 0.93
USP40-207ENST00000450940 DTWD2Q8NBA8 298 aa20.87■□□□□ 0.93
USP40-207ENST00000450940 OR5B17Q8NGF7 314 aa20.87■□□□□ 0.93
USP40-207ENST00000450940 NOC3LQ8WTT2 800 aaKnown RBP20.87■□□□□ 0.93
USP40-207ENST00000450940 SMARCD2Q92925 531 aa20.87■□□□□ 0.93
USP40-207ENST00000450940 ANKRD36BP1Q96IX9 119 aa20.87■□□□□ 0.93
USP40-207ENST00000450940 SPATA32Q96LK8 384 aa20.87■□□□□ 0.93
USP40-207ENST00000450940 ACBD6Q9BR61 282 aa20.87■□□□□ 0.93
USP40-207ENST00000450940 ZFP14Q9HCL3 533 aa20.87■□□□□ 0.93
USP40-207ENST00000450940 SLC39A2Q9NP94 309 aa20.87■□□□□ 0.93
USP40-207ENST00000450940 DLGAP2Q9P1A6 1054 aa20.87■□□□□ 0.93
USP40-207ENST00000450940 MIA3Q5JRA6 1907 aa20.86■□□□□ 0.93
USP40-207ENST00000450940 DENND4CQ5VZ89 1909 aa20.86■□□□□ 0.93
USP40-207ENST00000450940 A0A1B0GVL5 298 aa20.86■□□□□ 0.93
USP40-207ENST00000450940 HUS1O60921 280 aa20.86■□□□□ 0.93
USP40-207ENST00000450940 HAPLN1P10915 354 aaPredicted RBP20.86■□□□□ 0.93
USP40-207ENST00000450940 PFKFB1P16118 471 aa20.86■□□□□ 0.93
USP40-207ENST00000450940 GJA1P17302 382 aa20.86■□□□□ 0.93
USP40-207ENST00000450940 PSMD2Q13200 908 aa20.86■□□□□ 0.93
USP40-207ENST00000450940 SNRNP35Q16560 246 aaKnown RBP20.86■□□□□ 0.93
USP40-207ENST00000450940 DPH6Q7L8W6 267 aa20.86■□□□□ 0.93
USP40-207ENST00000450940 HS2ST1Q7LGA3 356 aa20.86■□□□□ 0.93
USP40-207ENST00000450940 ITIH5Q86UX2 942 aa20.86■□□□□ 0.93
USP40-207ENST00000450940 WDR49Q8IV35 697 aa20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 121.5 ms