RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 GBP6Q6ZN66 633 aa16.06■□□□□ 0.16
NUP54-213ENST00000513352 TAF4BQ92750 862 aa16.06■□□□□ 0.16
NUP54-213ENST00000513352 NT5C1BQ96P26 610 aa16.06■□□□□ 0.16
NUP54-213ENST00000513352 ZBP1Q9H171 429 aa16.06■□□□□ 0.16
NUP54-213ENST00000513352 XYLT2Q9H1B5 865 aa16.06■□□□□ 0.16
NUP54-213ENST00000513352 MRPL17Q9NRX2 175 aaKnown RBP16.06■□□□□ 0.16
NUP54-213ENST00000513352 MYO7AQ13402 2215 aa16.05■□□□□ 0.16
NUP54-213ENST00000513352 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.05■□□□□ 0.16
NUP54-213ENST00000513352 LGALS16A8MUM7 142 aa16.05■□□□□ 0.16
NUP54-213ENST00000513352 M0QZQ0 153 aa16.05■□□□□ 0.16
NUP54-213ENST00000513352 SYN3O14994 580 aa16.05■□□□□ 0.16
NUP54-213ENST00000513352 CXCL14O95715 111 aa16.05■□□□□ 0.16
NUP54-213ENST00000513352 ASS1P00966 412 aaKnown RBP16.05■□□□□ 0.16
NUP54-213ENST00000513352 FGFR3P22607 806 aa16.05■□□□□ 0.16
NUP54-213ENST00000513352 IGFBP4P22692 258 aa16.05■□□□□ 0.16
NUP54-213ENST00000513352 ERVFC1P60507 584 aa16.05■□□□□ 0.16
NUP54-213ENST00000513352 FANCCQ00597 558 aa16.05■□□□□ 0.16
NUP54-213ENST00000513352 UBXN1Q04323 297 aa16.05■□□□□ 0.16
NUP54-213ENST00000513352 SMC1AQ14683 1233 aaKnown RBP16.05■□□□□ 0.16
NUP54-213ENST00000513352 RTP2Q5QGT7 225 aa16.05■□□□□ 0.16
NUP54-213ENST00000513352 WSCD1Q658N2 575 aa16.05■□□□□ 0.16
NUP54-213ENST00000513352 PRSS55Q6UWB4 352 aaPredicted RBP16.05■□□□□ 0.16
NUP54-213ENST00000513352 Q7L0L9 218 aa16.05■□□□□ 0.16
NUP54-213ENST00000513352 GAS2L3Q86XJ1 694 aa16.05■□□□□ 0.16
NUP54-213ENST00000513352 ADGRF2Q8IZF7 708 aa16.05■□□□□ 0.16
NUP54-213ENST00000513352 PCMTD1Q96MG8 357 aaPredicted RBP16.05■□□□□ 0.16
NUP54-213ENST00000513352 GAS2L1Q99501 681 aaPredicted RBP16.05■□□□□ 0.16
NUP54-213ENST00000513352 NIF3L1Q9GZT8 377 aa16.05■□□□□ 0.16
NUP54-213ENST00000513352 LMAN2LQ9H0V9 348 aa16.05■□□□□ 0.16
NUP54-213ENST00000513352 RBSNQ9H1K0 784 aa16.05■□□□□ 0.16
NUP54-213ENST00000513352 SMYD3Q9H7B4 428 aa16.05■□□□□ 0.16
NUP54-213ENST00000513352 APOBEC3GQ9HC16 384 aaKnown RBP16.05■□□□□ 0.16
NUP54-213ENST00000513352 GDAP2Q9NXN4 497 aa16.05■□□□□ 0.16
NUP54-213ENST00000513352 CHD7Q9P2D1 2997 aa16.05■□□□□ 0.16
NUP54-213ENST00000513352 DSEQ9UL01 958 aa16.05■□□□□ 0.16
NUP54-213ENST00000513352 L1RE1Q9UN81 338 aa16.05■□□□□ 0.16
NUP54-213ENST00000513352 COQ4Q9Y3A0 265 aa16.05■□□□□ 0.16
NUP54-213ENST00000513352 PCDHGC5Q9Y5F6 944 aa16.05■□□□□ 0.16
NUP54-213ENST00000513352 TSC2P49815 1807 aa16.05■□□□□ 0.16
NUP54-213ENST00000513352 PMM2O15305 246 aa16.04■□□□□ 0.16
NUP54-213ENST00000513352 STAU1O95793 577 aaKnown RBP16.04■□□□□ 0.16
NUP54-213ENST00000513352 CTSAP10619 480 aa16.04■□□□□ 0.16
NUP54-213ENST00000513352 RAP1GAPP47736 663 aa16.04■□□□□ 0.16
NUP54-213ENST00000513352 YWHAHQ04917 246 aaPredicted RBP16.04■□□□□ 0.16
NUP54-213ENST00000513352 PSMD5Q16401 504 aa16.04■□□□□ 0.16
NUP54-213ENST00000513352 VARS2Q5ST30 1063 aaKnown RBP16.04■□□□□ 0.16
NUP54-213ENST00000513352 OVOS1Q6IE37 1185 aa16.04■□□□□ 0.16
NUP54-213ENST00000513352 ANKS3Q6ZW76 656 aa16.04■□□□□ 0.16
NUP54-213ENST00000513352 GLYCTKQ8IVS8 523 aa16.04■□□□□ 0.16
NUP54-213ENST00000513352 RNF168Q8IYW5 571 aaPredicted RBP16.04■□□□□ 0.16
NUP54-213ENST00000513352 PDCL2Q8N4E4 241 aa16.04■□□□□ 0.16
NUP54-213ENST00000513352 DEFB123Q8N688 67 aa16.04■□□□□ 0.16
NUP54-213ENST00000513352 EHBP1Q8NDI1 1231 aa16.04■□□□□ 0.16
NUP54-213ENST00000513352 MRPL38Q96DV4 380 aaKnown RBP16.04■□□□□ 0.16
NUP54-213ENST00000513352 LSM14BQ9BX40 385 aaKnown RBP16.04■□□□□ 0.16
NUP54-213ENST00000513352 SNX25Q9H3E2 840 aa16.04■□□□□ 0.16
NUP54-213ENST00000513352 ATG2AQ2TAZ0 1938 aa16.04■□□□□ 0.16
NUP54-213ENST00000513352 GTPBP10A4D1E9 387 aaKnown RBP16.03■□□□□ 0.16
NUP54-213ENST00000513352 H7C4K7 107 aa16.03■□□□□ 0.16
NUP54-213ENST00000513352 RPL17P18621 184 aaKnown RBP16.03■□□□□ 0.16
NUP54-213ENST00000513352 TYMPP19971 482 aa16.03■□□□□ 0.16
NUP54-213ENST00000513352 IRS1P35568 1242 aa16.03■□□□□ 0.16
NUP54-213ENST00000513352 FXR1P51114 621 aaKnown RBP eCLIP16.03■□□□□ 0.16
NUP54-213ENST00000513352 UBASH3AP57075 661 aa16.03■□□□□ 0.16
NUP54-213ENST00000513352 DSG1Q02413 1049 aa16.03■□□□□ 0.16
NUP54-213ENST00000513352 PTPN14Q15678 1187 aa16.03■□□□□ 0.16
NUP54-213ENST00000513352 SOWAHAQ2M3V2 549 aa16.03■□□□□ 0.16
NUP54-213ENST00000513352 CTXN3Q4LDR2 81 aa16.03■□□□□ 0.16
NUP54-213ENST00000513352 PDE12Q6L8Q7 609 aaKnown RBP16.03■□□□□ 0.16
NUP54-213ENST00000513352 ZNF280DQ6N043 979 aa16.03■□□□□ 0.16
NUP54-213ENST00000513352 PDXDC1Q6P996 788 aa16.03■□□□□ 0.16
NUP54-213ENST00000513352 MICALL1Q8N3F8 863 aa16.03■□□□□ 0.16
NUP54-213ENST00000513352 PPM1KQ8N3J5 372 aa16.03■□□□□ 0.16
NUP54-213ENST00000513352 TOP6BLQ8N6T0 577 aa16.03■□□□□ 0.16
NUP54-213ENST00000513352 TATDN2Q93075 761 aa16.03■□□□□ 0.16
NUP54-213ENST00000513352 VRTNQ9H8Y1 702 aa16.03■□□□□ 0.16
NUP54-213ENST00000513352 NGRNQ9NPE2 291 aaKnown RBP16.03■□□□□ 0.16
NUP54-213ENST00000513352 SSX2IPQ9Y2D8 614 aa16.03■□□□□ 0.16
NUP54-213ENST00000513352 FSCN2O14926 492 aa16.02■□□□□ 0.16
NUP54-213ENST00000513352 EFEMP2O95967 443 aa16.02■□□□□ 0.16
NUP54-213ENST00000513352 CYP11A1P05108 521 aa16.02■□□□□ 0.16
NUP54-213ENST00000513352 WEE2P0C1S8 567 aa16.02■□□□□ 0.16
NUP54-213ENST00000513352 CD58P19256 250 aa16.02■□□□□ 0.16
NUP54-213ENST00000513352 SLC9A1P19634 815 aa16.02■□□□□ 0.16
NUP54-213ENST00000513352 ASPAP45381 313 aa16.02■□□□□ 0.16
NUP54-213ENST00000513352 CDH8P55286 799 aa16.02■□□□□ 0.16
NUP54-213ENST00000513352 ARPP19P56211 112 aa16.02■□□□□ 0.16
NUP54-213ENST00000513352 CREMQ03060 361 aa16.02■□□□□ 0.16
NUP54-213ENST00000513352 GPR153Q6NV75 609 aa16.02■□□□□ 0.16
NUP54-213ENST00000513352 TRIM65Q6PJ69 517 aa16.02■□□□□ 0.16
NUP54-213ENST00000513352 APTXQ7Z2E3 356 aaKnown RBP16.02■□□□□ 0.16
NUP54-213ENST00000513352 THEM5Q8N1Q8 247 aa16.02■□□□□ 0.16
NUP54-213ENST00000513352 TMEM86AQ8N2M4 240 aa16.02■□□□□ 0.16
NUP54-213ENST00000513352 OR6B3Q8NGW1 331 aa16.02■□□□□ 0.16
NUP54-213ENST00000513352 PIK3R5Q8WYR1 880 aa16.02■□□□□ 0.16
NUP54-213ENST00000513352 MRPL45Q9BRJ2 306 aaKnown RBP16.02■□□□□ 0.16
NUP54-213ENST00000513352 EMILIN2Q9BXX0 1053 aa16.02■□□□□ 0.16
NUP54-213ENST00000513352 CHST7Q9NS84 486 aa16.02■□□□□ 0.16
NUP54-213ENST00000513352 IFNKQ9P0W0 207 aa16.02■□□□□ 0.16
NUP54-213ENST00000513352 LRRC10BA6NIK2 292 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 77.4 ms