RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 TRIM32Q13049 653 aa14.58□□□□□ -0.08
CCDC88A-201ENST00000263630 CNKSR1Q969H4 720 aa14.58□□□□□ -0.08
CCDC88A-201ENST00000263630 ATXN7L3BQ96GX2 97 aa14.58□□□□□ -0.08
CCDC88A-201ENST00000263630 RPRD2Q5VT52 1461 aaKnown RBP14.58□□□□□ -0.08
CCDC88A-201ENST00000263630 ATP1A1P05023 1023 aaKnown RBP14.58□□□□□ -0.08
CCDC88A-201ENST00000263630 MFSD4BQ5TF39 518 aa14.58□□□□□ -0.08
CCDC88A-201ENST00000263630 RSBN1Q5VWQ0 802 aaPredicted RBP14.58□□□□□ -0.08
CCDC88A-201ENST00000263630 ENKURQ8TC29 256 aa14.58□□□□□ -0.08
CCDC88A-201ENST00000263630 RMND5AQ9H871 391 aa14.58□□□□□ -0.08
CCDC88A-201ENST00000263630 AP3M2P53677 418 aa14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 UXS1Q8NBZ7 420 aa14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 ADAMTS1Q9UHI8 967 aa14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 SPAG6O75602 509 aa14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 STAT5AP42229 794 aa14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 STAT5BP51692 787 aa14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 TSNQ15631 228 aaKnown RBP14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 TRIP10Q15642 601 aa14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 USP13Q92995 863 aaPredicted RBP14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 HEMGNQ9BXL5 484 aa14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 CEP44Q9C0F1 390 aa14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 RXRGP48443 463 aa14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 MIGA2Q7L4E1 593 aa14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 HEATR4Q86WZ0 1026 aa14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 IZUMO1Q8IYV9 350 aa14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 MMGT1Q8N4V1 131 aa14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 HPS4Q9NQG7 708 aa14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 SH3BP4Q9P0V3 963 aa14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 IFT140Q96RY7 1462 aa14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 C12orf60Q5U649 245 aa14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 TRPM5Q9NZQ8 1165 aa14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 USP15Q9Y4E8 981 aaPredicted RBP14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 TNRQ92752 1358 aa14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 ADGRF5Q8IZF2 1346 aa14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 MYL3P08590 195 aa14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 NFICP08651 508 aa14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 ZHX2Q9Y6X8 837 aa14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 M0QYV0 167 aa14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 MED26O95402 600 aa14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 ADD1P35611 737 aaKnown RBP14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 OXCT2Q9BYC2 517 aaPredicted RBP14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 SLC25A13Q9UJS0 675 aa14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 EIF3HO15372 352 aaKnown RBP eCLIP14.57□□□□□ -0.083e-6■■□□□ 13.8
CCDC88A-201ENST00000263630 LCA5LO95447 670 aa14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 CCT3P49368 545 aaKnown RBP14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 TTC39BQ5VTQ0 682 aaPredicted RBP14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 PTRHD1Q6GMV3 140 aaKnown RBP14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 CDC73Q6P1J9 531 aa14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 TRABDQ9H4I3 376 aa14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 DHX35Q9H5Z1 703 aaKnown RBP14.57□□□□□ -0.08
CCDC88A-201ENST00000263630 KCNN4O15554 427 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 NRG3P56975 720 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 RIBC1Q8N443 379 aaPredicted RBP14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 YWHABP31946 246 aaKnown RBP14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 VHLP40337 213 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 PEX3P56589 373 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 PTK6Q13882 451 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 CBFBQ13951 182 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 KIAA0408Q6ZU52 694 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 IL17RAQ96F46 866 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 SERPINB12Q96P63 405 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 TRIM39Q9HCM9 518 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 TSPAN9O75954 239 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 FOSL2P15408 326 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 NCAPHQ15003 741 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 TAF2Q6P1X5 1199 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 TMC4Q7Z404 712 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 ATPAF2Q8N5M1 289 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 MAPK1P28482 360 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 CYP27A1Q02318 531 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 PRPF39Q86UA1 669 aaKnown RBP14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 MTMR6Q9Y217 621 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 PLXNC1O60486 1568 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 NUP160Q12769 1436 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 TRAPPC3O43617 180 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 AGTP01019 485 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 PTPN12Q05209 780 aaKnown RBP14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 PWP1Q13610 501 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 IZUMO3Q5VZ72 239 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 PGBD3Q8N328 593 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 IP6K1Q92551 441 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 TASP1Q9H6P5 420 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 PSMC3IPQ9P2W1 217 aaPredicted RBP14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 ARAP1Q96P48 1450 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 A0A1W2PRG6 482 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 AIM2O14862 343 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 ZNF862O60290 1169 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 SCRN1Q12765 414 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 KIAA0825Q8IV33 1275 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 XXYLT1Q8NBI6 393 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 ABHD10Q9NUJ1 306 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 DNAJC12Q9UKB3 198 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 EIF3LQ9Y262 564 aaKnown RBP14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 SLC30A1Q9Y6M5 507 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 MAGEA13PA6NCF6 341 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 FAM102AQ5T9C2 384 aaPredicted RBP14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 PLEKHA7Q6IQ23 1121 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 COMMD2Q86X83 199 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 FAM153AQ9UHL3 310 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 PYCARDQ9ULZ3 195 aa14.56□□□□□ -0.08
CCDC88A-201ENST00000263630 CDK13Q14004 1512 aaKnown RBP14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms