RNA–Protein interactions for RNA: ENST00000503427.5

HMGXB3-202, Transcript of HMG-box containing 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene HMGXB3, Length 5,275 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB3-202ENST00000503427 NRBF2Q96F24 287 aa17.12■□□□□ 0.33
HMGXB3-202ENST00000503427 DEFB129Q9H1M3 183 aa17.12■□□□□ 0.33
HMGXB3-202ENST00000503427 POLLQ9UGP5 575 aa17.12■□□□□ 0.33
HMGXB3-202ENST00000503427 MAD2L2Q9UI95 211 aa17.12■□□□□ 0.33
HMGXB3-202ENST00000503427 HPCAL4Q9UM19 191 aa17.12■□□□□ 0.33
HMGXB3-202ENST00000503427 TRIM33Q9UPN9 1127 aa17.12■□□□□ 0.33
HMGXB3-202ENST00000503427 ELF1P32519 619 aa17.12■□□□□ 0.33
HMGXB3-202ENST00000503427 PAPOLAP51003 745 aaKnown RBP17.12■□□□□ 0.33
HMGXB3-202ENST00000503427 HIPK4Q8NE63 616 aa17.12■□□□□ 0.33
HMGXB3-202ENST00000503427 SCG3Q8WXD2 468 aaKnown RBP17.12■□□□□ 0.33
HMGXB3-202ENST00000503427 CCDC124Q96CT7 223 aaKnown RBP17.12■□□□□ 0.33
HMGXB3-202ENST00000503427 MS4A14Q96JA4 679 aa17.12■□□□□ 0.33
HMGXB3-202ENST00000503427 MRPL46Q9H2W6 279 aaKnown RBP17.12■□□□□ 0.33
HMGXB3-202ENST00000503427 KLC4Q9NSK0 619 aa17.12■□□□□ 0.33
HMGXB3-202ENST00000503427 TNS2Q63HR2 1409 aa17.11■□□□□ 0.33
HMGXB3-202ENST00000503427 GALCP54803 685 aa17.11■□□□□ 0.33
HMGXB3-202ENST00000503427 ZC3H15Q8WU90 426 aaKnown RBP17.11■□□□□ 0.33
HMGXB3-202ENST00000503427 TMEM39BQ9GZU3 492 aa17.11■□□□□ 0.33
HMGXB3-202ENST00000503427 SALL3Q9BXA9 1300 aa17.11■□□□□ 0.33
HMGXB3-202ENST00000503427 ROR1Q01973 937 aa17.11■□□□□ 0.33
HMGXB3-202ENST00000503427 COL23A1Q86Y22 540 aaPredicted RBP17.11■□□□□ 0.33
HMGXB3-202ENST00000503427 RYBPQ8N488 228 aaPredicted RBP17.11■□□□□ 0.33
HMGXB3-202ENST00000503427 MXRA8Q9BRK3 442 aa17.11■□□□□ 0.33
HMGXB3-202ENST00000503427 VPS11Q9H270 941 aa17.11■□□□□ 0.33
HMGXB3-202ENST00000503427 SUDS3Q9H7L9 328 aaPredicted RBP17.11■□□□□ 0.33
HMGXB3-202ENST00000503427 MRPL40Q9NQ50 206 aaKnown RBP17.11■□□□□ 0.33
HMGXB3-202ENST00000503427 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.11■□□□□ 0.33
HMGXB3-202ENST00000503427 M0QYV0 167 aa17.11■□□□□ 0.33
HMGXB3-202ENST00000503427 SCP2P22307 547 aa17.11■□□□□ 0.33
HMGXB3-202ENST00000503427 XPAP23025 273 aaPredicted RBP17.11■□□□□ 0.33
HMGXB3-202ENST00000503427 EEF1B2P24534 225 aaKnown RBP17.11■□□□□ 0.33
HMGXB3-202ENST00000503427 BCAR1P56945 870 aa17.11■□□□□ 0.33
HMGXB3-202ENST00000503427 MXD4Q14582 209 aaPredicted RBP17.11■□□□□ 0.33
HMGXB3-202ENST00000503427 NAB2Q15742 525 aa17.11■□□□□ 0.33
HMGXB3-202ENST00000503427 SLC35G2Q8TBE7 412 aa17.11■□□□□ 0.33
HMGXB3-202ENST00000503427 PSD3Q9NYI0 1048 aa17.11■□□□□ 0.33
HMGXB3-202ENST00000503427 PITPNM2Q9BZ72 1349 aa17.11■□□□□ 0.33
HMGXB3-202ENST00000503427 MYMKA6NI61 221 aa17.11■□□□□ 0.33
HMGXB3-202ENST00000503427 SLC4A1P02730 911 aa17.11■□□□□ 0.33
HMGXB3-202ENST00000503427 RPA1P27694 616 aa17.11■□□□□ 0.33
HMGXB3-202ENST00000503427 ACTN3Q08043 901 aaPredicted RBP17.11■□□□□ 0.33
HMGXB3-202ENST00000503427 TRMT10CQ7L0Y3 403 aaKnown RBP17.11■□□□□ 0.33
HMGXB3-202ENST00000503427 CHST13Q8NET6 341 aa17.11■□□□□ 0.33
HMGXB3-202ENST00000503427 REEP2Q9BRK0 252 aa17.11■□□□□ 0.33
HMGXB3-202ENST00000503427 ASAP2O43150 1006 aa17.1■□□□□ 0.33
HMGXB3-202ENST00000503427 CYP26A1O43174 497 aa17.1■□□□□ 0.33
HMGXB3-202ENST00000503427 PHF2O75151 1096 aa17.1■□□□□ 0.33
HMGXB3-202ENST00000503427 CASP7P55210 303 aa17.1■□□□□ 0.33
HMGXB3-202ENST00000503427 PDCD2Q16342 344 aaPredicted RBP17.1■□□□□ 0.33
HMGXB3-202ENST00000503427 TMTC4Q5T4D3 741 aa17.1■□□□□ 0.33
HMGXB3-202ENST00000503427 HEATR6Q6AI08 1181 aaKnown RBP17.1■□□□□ 0.33
HMGXB3-202ENST00000503427 RWDD4Q6NW29 188 aaKnown RBP17.1■□□□□ 0.33
HMGXB3-202ENST00000503427 FGD4Q96M96 766 aa17.1■□□□□ 0.33
HMGXB3-202ENST00000503427 TRIM10Q9UDY6 481 aa17.1■□□□□ 0.33
HMGXB3-202ENST00000503427 NVLO15381 856 aaKnown RBP17.1■□□□□ 0.33
HMGXB3-202ENST00000503427 FGFR4P22455 802 aa17.1■□□□□ 0.33
HMGXB3-202ENST00000503427 NOP14P78316 857 aaKnown RBP17.1■□□□□ 0.33
HMGXB3-202ENST00000503427 CYFIP1Q7L576 1253 aa17.1■□□□□ 0.33
HMGXB3-202ENST00000503427 CDKL3Q8IVW4 592 aaPredicted RBP17.1■□□□□ 0.33
HMGXB3-202ENST00000503427 SMARCAD1Q9H4L7 1026 aa17.1■□□□□ 0.33
HMGXB3-202ENST00000503427 TSPY1Q01534 308 aa17.1■□□□□ 0.33
HMGXB3-202ENST00000503427 TSTA3Q13630 321 aaPredicted RBP17.1■□□□□ 0.33
HMGXB3-202ENST00000503427 NUDCD3Q8IVD9 361 aa17.1■□□□□ 0.33
HMGXB3-202ENST00000503427 RNF149Q8NC42 400 aa17.1■□□□□ 0.33
HMGXB3-202ENST00000503427 CXorf38Q8TB03 319 aa17.1■□□□□ 0.33
HMGXB3-202ENST00000503427 GIPC2Q8TF65 315 aa17.1■□□□□ 0.33
HMGXB3-202ENST00000503427 HNRNPLLQ8WVV9 542 aaKnown RBP17.1■□□□□ 0.33
HMGXB3-202ENST00000503427 SUN2Q9UH99 717 aa17.1■□□□□ 0.33
HMGXB3-202ENST00000503427 NPHP3-ACAD11A0A0J9YXS1 232 aa17.1■□□□□ 0.33
HMGXB3-202ENST00000503427 PYGBP11216 843 aa17.1■□□□□ 0.33
HMGXB3-202ENST00000503427 ZNF473Q8WTR7 871 aaKnown RBP17.1■□□□□ 0.33
HMGXB3-202ENST00000503427 CCT8L2Q96SF2 557 aa17.1■□□□□ 0.33
HMGXB3-202ENST00000503427 STAP1Q9ULZ2 295 aa17.1■□□□□ 0.33
HMGXB3-202ENST00000503427 FMO5P49326 533 aa17.09■□□□□ 0.33
HMGXB3-202ENST00000503427 SPATA21Q7Z572 469 aa17.09■□□□□ 0.33
HMGXB3-202ENST00000503427 ARL2BPQ9Y2Y0 163 aa17.09■□□□□ 0.33
HMGXB3-202ENST00000503427 CCDC22O60826 627 aa17.09■□□□□ 0.33
HMGXB3-202ENST00000503427 PPARGP37231 505 aaPredicted RBP17.09■□□□□ 0.33
HMGXB3-202ENST00000503427 ARSEP51690 589 aa17.09■□□□□ 0.33
HMGXB3-202ENST00000503427 AP2B1P63010 937 aa17.09■□□□□ 0.33
HMGXB3-202ENST00000503427 EHD4Q9H223 541 aa17.09■□□□□ 0.33
HMGXB3-202ENST00000503427 XAB2Q9HCS7 855 aaKnown RBP17.09■□□□□ 0.33
HMGXB3-202ENST00000503427 RBM12Q9NTZ6 932 aaKnown RBP17.09■□□□□ 0.33
HMGXB3-202ENST00000503427 PRKCBP05771 671 aa17.09■□□□□ 0.33
HMGXB3-202ENST00000503427 EPHB1P54762 984 aa17.09■□□□□ 0.33
HMGXB3-202ENST00000503427 AGBL2Q5U5Z8 902 aa17.09■□□□□ 0.33
HMGXB3-202ENST00000503427 MMGT1Q8N4V1 131 aa17.09■□□□□ 0.33
HMGXB3-202ENST00000503427 ITIH2P19823 946 aa17.09■□□□□ 0.33
HMGXB3-202ENST00000503427 SH2D3CQ8N5H7 860 aa17.09■□□□□ 0.33
HMGXB3-202ENST00000503427 RDM1Q8NG50 284 aa17.09■□□□□ 0.33
HMGXB3-202ENST00000503427 ZNF560Q96MR9 790 aa17.09■□□□□ 0.33
HMGXB3-202ENST00000503427 TNPO2O14787 897 aaKnown RBP17.08■□□□□ 0.33
HMGXB3-202ENST00000503427 RFC5P40937 340 aa17.08■□□□□ 0.33
HMGXB3-202ENST00000503427 SNRPFP62306 86 aaKnown RBP17.08■□□□□ 0.33
HMGXB3-202ENST00000503427 KIF19Q2TAC6 998 aa17.08■□□□□ 0.33
HMGXB3-202ENST00000503427 BTBD6Q96KE9 485 aa17.08■□□□□ 0.33
HMGXB3-202ENST00000503427 PARK7Q99497 189 aaKnown RBP17.08■□□□□ 0.33
HMGXB3-202ENST00000503427 UBN1Q9NPG3 1134 aa17.08■□□□□ 0.33
HMGXB3-202ENST00000503427 ANLNQ9NQW6 1124 aa17.08■□□□□ 0.33
HMGXB3-202ENST00000503427 HSPBP1Q9NZL4 362 aa17.08■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms