RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 SPATS2Q86XZ4 545 aaKnown RBP5.91□□□□□ -1.46
LIMA1-203ENST00000547825 CCNJLQ8IV13 435 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 CCDC65Q8IXS2 484 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 P2RX5Q93086 422 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 GSX2Q9BZM3 304 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 LACRTQ9GZZ8 138 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 EPB41L4AQ9HCS5 686 aaPredicted RBP5.91□□□□□ -1.46
LIMA1-203ENST00000547825 PIH1D3Q9NQM4 214 aaKnown RBP5.91□□□□□ -1.46
LIMA1-203ENST00000547825 RBM28Q9NW13 759 aaKnown RBP5.91□□□□□ -1.46
LIMA1-203ENST00000547825 ADD3Q9UEY8 706 aaKnown RBP5.91□□□□□ -1.46
LIMA1-203ENST00000547825 AMFRQ9UKV5 643 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 ZSWIM8A7E2V4 1837 aa5.91□□□□□ -1.46
LIMA1-203ENST00000547825 LRRD1A4D1F6 860 aa5.9□□□□□ -1.46
LIMA1-203ENST00000547825 WDR91A4D1P6 747 aa5.9□□□□□ -1.46
LIMA1-203ENST00000547825 ACSL3O95573 720 aa5.9□□□□□ -1.46
LIMA1-203ENST00000547825 PLEKP08567 350 aaPredicted RBP5.9□□□□□ -1.46
LIMA1-203ENST00000547825 RARAP10276 462 aa5.9□□□□□ -1.46
LIMA1-203ENST00000547825 EDN3P14138 238 aa5.9□□□□□ -1.46
LIMA1-203ENST00000547825 ERVK-24P63145 666 aa5.9□□□□□ -1.46
LIMA1-203ENST00000547825 DYNLL1P63167 89 aaKnown RBP5.9□□□□□ -1.46
LIMA1-203ENST00000547825 NONOQ15233 471 aaKnown RBP eCLIP5.9□□□□□ -1.46
LIMA1-203ENST00000547825 SNAP47Q5SQN1 464 aa5.9□□□□□ -1.46
LIMA1-203ENST00000547825 SEL1L2Q5TEA6 688 aa5.9□□□□□ -1.46
LIMA1-203ENST00000547825 NAIF1Q69YI7 327 aaPredicted RBP5.9□□□□□ -1.46
LIMA1-203ENST00000547825 TTBK2Q6IQ55 1244 aa5.9□□□□□ -1.46
LIMA1-203ENST00000547825 CYP4F22Q6NT55 531 aa5.9□□□□□ -1.46
LIMA1-203ENST00000547825 RASGRP2Q7LDG7 609 aa5.9□□□□□ -1.46
LIMA1-203ENST00000547825 LCORLQ8N3X6 602 aa5.9□□□□□ -1.46
LIMA1-203ENST00000547825 FBXL16Q8N461 479 aa5.9□□□□□ -1.46
LIMA1-203ENST00000547825 KIF2BQ8N4N8 673 aa5.9□□□□□ -1.46
LIMA1-203ENST00000547825 OR13H1Q8NG92 308 aa5.9□□□□□ -1.46
LIMA1-203ENST00000547825 MDM1Q8TC05 714 aa5.9□□□□□ -1.46
LIMA1-203ENST00000547825 ZNF473Q8WTR7 871 aaKnown RBP5.9□□□□□ -1.46
LIMA1-203ENST00000547825 GJA10Q969M2 543 aa5.9□□□□□ -1.46
LIMA1-203ENST00000547825 SAAL1Q96ER3 474 aa5.9□□□□□ -1.46
LIMA1-203ENST00000547825 ZIM3Q96PE6 472 aa5.9□□□□□ -1.46
LIMA1-203ENST00000547825 SMC6Q96SB8 1091 aa5.9□□□□□ -1.46
LIMA1-203ENST00000547825 DDX23Q9BUQ8 820 aaKnown RBP5.9□□□□□ -1.46
LIMA1-203ENST00000547825 NT5C1AQ9BXI3 368 aa5.9□□□□□ -1.46
LIMA1-203ENST00000547825 PSD3Q9NYI0 1048 aa5.9□□□□□ -1.46
LIMA1-203ENST00000547825 RWDD2AQ9UIY3 292 aa5.9□□□□□ -1.46
LIMA1-203ENST00000547825 ATRNL1Q5VV63 1379 aa5.9□□□□□ -1.46
LIMA1-203ENST00000547825 LRRC37A2A6NM11 1700 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 FAM237AA0A1B0GTK4 181 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 ZSCAN5CA6NGD5 496 aaPredicted RBP5.9□□□□□ -1.47
LIMA1-203ENST00000547825 POC1B-GALNT4F8VUJ3 575 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 NMT2O60551 498 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 DIAPH2O60879 1101 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 CIAO1O76071 339 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 BAG3O95817 575 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 MMEP08473 750 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 H2AFZP0C0S5 128 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 EPB42P16452 691 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 NFKB1P19838 968 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 FSTL1Q12841 308 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 CALCRLQ16602 461 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 HHATQ5VTY9 493 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 RFX8Q6ZV50 586 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 ZNF365Q70YC5 407 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 H2AFVQ71UI9 128 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 TAOK1Q7L7X3 1001 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 RPUSD2Q8IZ73 545 aaKnown RBP5.9□□□□□ -1.47
LIMA1-203ENST00000547825 SCYL3Q8IZE3 742 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 GBP5Q96PP8 586 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 NDST4Q9H3R1 872 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 KCNQ5Q9NR82 932 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 HOMER3Q9NSC5 361 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 RBM12Q9NTZ6 932 aaKnown RBP5.9□□□□□ -1.47
LIMA1-203ENST00000547825 REXO2Q9Y3B8 237 aaKnown RBP5.9□□□□□ -1.47
LIMA1-203ENST00000547825 FAM205AQ6ZU69 1335 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 ZNF236Q9UL36 1845 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 TCRBV5S4A2TA0A5A2 114 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 LRRC53A6NM62 1247 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 MAP2K7O14733 419 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 LRRN2O75325 713 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 GCNT3O95395 438 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 PLCG1P19174 1290 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 EEF1GP26641 437 aaKnown RBP5.9□□□□□ -1.47
LIMA1-203ENST00000547825 PBX1P40424 430 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 MMP14P50281 582 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 CYP4A11Q02928 519 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 ADAM9Q13443 819 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 MESDQ14696 234 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 PSMD6Q15008 389 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 MYOCDQ8IZQ8 938 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 LPIN2Q92539 896 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 PLVAPQ9BX97 442 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 LRRC27Q9C0I9 530 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 AMACRQ9UHK6 382 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 COL4A3BPQ9Y5P4 624 aa5.9□□□□□ -1.47
LIMA1-203ENST00000547825 CCDC169A6NNP5 214 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 TTLL8A6PVC2 850 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 DAPK3O43293 454 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 PDHBP11177 359 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 ADD2P35612 726 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 KCNJ6P48051 423 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 SARSP49591 514 aaKnown RBP5.89□□□□□ -1.47
LIMA1-203ENST00000547825 CYP2J2P51589 502 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 SP4Q02446 784 aa5.89□□□□□ -1.47
LIMA1-203ENST00000547825 SEPT14Q6ZU15 432 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms