RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 RAB21Q9UL25 225 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 KCNJ14Q9UNX9 436 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 B2RBV5 119 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 E7EWF7 191 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 FAM102BQ5T8I3 360 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 WLSQ5T9L3 541 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 SNX30Q5VWJ9 437 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 DRAXINQ8NBI3 349 aaPredicted RBP14.04□□□□□ -0.16
USP40-208ENST00000450966 GIMAP8Q8ND71 665 aaPredicted RBP14.04□□□□□ -0.16
USP40-208ENST00000450966 GINS4Q9BRT9 223 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 PASD1Q8IV76 773 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 PLEKHF1Q96S99 279 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 MED10Q9BTT4 135 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 VPS54Q9P1Q0 977 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 LRFN2Q9ULH4 789 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 CLTCQ00610 1675 aaKnown RBP14.04□□□□□ -0.16
USP40-208ENST00000450966 SGK1O00141 431 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 AREL1O15033 823 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 TNFAIP8O95379 198 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 LIG4P49917 911 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 P3H1Q32P28 736 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 MIS18BP1Q6P0N0 1132 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 C1orf228Q6PIY5 440 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 OSBPL8Q9BZF1 889 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 WDR11Q9BZH6 1224 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 ADNPQ9H2P0 1102 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 TRIM39Q9HCM9 518 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 TMED5Q9Y3A6 229 aa14.04□□□□□ -0.16
USP40-208ENST00000450966 KLRF2D3W0D1 207 aa14.03□□□□□ -0.16
USP40-208ENST00000450966 CNOT3O75175 753 aaKnown RBP14.03□□□□□ -0.16
USP40-208ENST00000450966 CDH3P22223 829 aa14.03□□□□□ -0.16
USP40-208ENST00000450966 KDSRQ06136 332 aa14.03□□□□□ -0.16
USP40-208ENST00000450966 INPP5AQ14642 412 aa14.03□□□□□ -0.16
USP40-208ENST00000450966 MAPRE2Q15555 327 aa14.03□□□□□ -0.16
USP40-208ENST00000450966 BLIDQ8IZY5 108 aa14.03□□□□□ -0.16
USP40-208ENST00000450966 SYMPKQ92797 1274 aaKnown RBP14.03□□□□□ -0.16
USP40-208ENST00000450966 RXFP1Q9HBX9 757 aa14.03□□□□□ -0.16
USP40-208ENST00000450966 PCP4L1A6NKN8 68 aa14.03□□□□□ -0.16
USP40-208ENST00000450966 RAD17O75943 681 aa14.03□□□□□ -0.16
USP40-208ENST00000450966 ALOX15P16050 662 aaPredicted RBP14.03□□□□□ -0.16
USP40-208ENST00000450966 TRMT2AQ8IZ69 625 aaKnown RBP14.03□□□□□ -0.16
USP40-208ENST00000450966 SYNE4Q8N205 404 aa14.03□□□□□ -0.16
USP40-208ENST00000450966 KLC2Q9H0B6 622 aa14.03□□□□□ -0.16
USP40-208ENST00000450966 HOXC10Q9NYD6 342 aa14.03□□□□□ -0.16
USP40-208ENST00000450966 TTLL3Q9Y4R7 772 aa14.03□□□□□ -0.16
USP40-208ENST00000450966 ZMYM6O95789 1325 aa14.03□□□□□ -0.16
USP40-208ENST00000450966 SOS2Q07890 1332 aaPredicted RBP14.03□□□□□ -0.16
USP40-208ENST00000450966 H3BRJ5 948 aa14.03□□□□□ -0.16
USP40-208ENST00000450966 GOLGA8MH3BSY2 632 aa14.03□□□□□ -0.16
USP40-208ENST00000450966 BMP3P12645 472 aa14.03□□□□□ -0.16
USP40-208ENST00000450966 ZNF18P17022 549 aa14.03□□□□□ -0.16
USP40-208ENST00000450966 KRT39Q6A163 491 aa14.03□□□□□ -0.16
USP40-208ENST00000450966 TMEM179Q6ZVK1 233 aa14.03□□□□□ -0.16
USP40-208ENST00000450966 PDZD4Q76G19 769 aaPredicted RBP14.03□□□□□ -0.16
USP40-208ENST00000450966 TRIM59Q8IWR1 403 aa14.03□□□□□ -0.16
USP40-208ENST00000450966 UBN1Q9NPG3 1134 aa14.03□□□□□ -0.16
USP40-208ENST00000450966 ZNF277Q9NRM2 450 aaPredicted RBP14.03□□□□□ -0.16
USP40-208ENST00000450966 DNAAF2Q9NVR5 837 aaKnown RBP14.03□□□□□ -0.16
USP40-208ENST00000450966 ADA2Q9NZK5 511 aa14.03□□□□□ -0.16
USP40-208ENST00000450966 A8MXQ7 604 aa14.03□□□□□ -0.16
USP40-208ENST00000450966 NOP9Q86U38 636 aaKnown RBP14.03□□□□□ -0.16
USP40-208ENST00000450966 GPBP1Q86WP2 473 aa14.03□□□□□ -0.16
USP40-208ENST00000450966 NOA1Q8NC60 698 aaKnown RBP14.03□□□□□ -0.16
USP40-208ENST00000450966 ANKRD36BP1Q96IX9 119 aa14.03□□□□□ -0.16
USP40-208ENST00000450966 VPS50Q96JG6 964 aa14.03□□□□□ -0.16
USP40-208ENST00000450966 CRAMP1Q96RY5 1269 aa14.03□□□□□ -0.16
USP40-208ENST00000450966 MRPL1Q9BYD6 325 aaKnown RBP14.03□□□□□ -0.16
USP40-208ENST00000450966 DCDC2Q9UHG0 476 aa14.03□□□□□ -0.16
USP40-208ENST00000450966 CLRN2A0PK11 232 aa14.02□□□□□ -0.16
USP40-208ENST00000450966 CCDC189A1A4V9 331 aa14.02□□□□□ -0.16
USP40-208ENST00000450966 KLHL2O95198 593 aa14.02□□□□□ -0.16
USP40-208ENST00000450966 PTH1RQ03431 593 aa14.02□□□□□ -0.16
USP40-208ENST00000450966 C16orf89Q6UX73 402 aa14.02□□□□□ -0.16
USP40-208ENST00000450966 PDIK1LQ8N165 341 aa14.02□□□□□ -0.16
USP40-208ENST00000450966 B3GALT6Q96L58 329 aa14.02□□□□□ -0.16
USP40-208ENST00000450966 PPCSQ9HAB8 311 aa14.02□□□□□ -0.16
USP40-208ENST00000450966 SAYSD1Q9NPB0 183 aa14.02□□□□□ -0.16
USP40-208ENST00000450966 TIMMDC1Q9NPL8 285 aa14.02□□□□□ -0.16
USP40-208ENST00000450966 ZNF212Q9UDV6 495 aa14.02□□□□□ -0.16
USP40-208ENST00000450966 MED14O60244 1454 aa14.02□□□□□ -0.16
USP40-208ENST00000450966 SPATA31A1Q5TZJ5 1347 aa14.02□□□□□ -0.16
USP40-208ENST00000450966 LGALS16A8MUM7 142 aa14.02□□□□□ -0.16
USP40-208ENST00000450966 PRR23D1E9PI22 279 aaPredicted RBP14.02□□□□□ -0.16
USP40-208ENST00000450966 MAP2K7O14733 419 aa14.02□□□□□ -0.16
USP40-208ENST00000450966 PRR23D2P0DMB1 279 aaPredicted RBP14.02□□□□□ -0.16
USP40-208ENST00000450966 RECQLP46063 649 aaPredicted RBP14.02□□□□□ -0.16
USP40-208ENST00000450966 MARK2Q7KZI7 788 aaKnown RBP14.02□□□□□ -0.16
USP40-208ENST00000450966 TSPAN18Q96SJ8 248 aa14.02□□□□□ -0.16
USP40-208ENST00000450966 ANO3Q9BYT9 981 aa14.02□□□□□ -0.16
USP40-208ENST00000450966 FAM58BPP0C7Q3 252 aa14.02□□□□□ -0.17
USP40-208ENST00000450966 ATP6V1C1P21283 382 aa14.02□□□□□ -0.17
USP40-208ENST00000450966 XKR9Q5GH70 373 aa14.02□□□□□ -0.17
USP40-208ENST00000450966 RHOT2Q8IXI1 618 aa14.02□□□□□ -0.17
USP40-208ENST00000450966 CTNNAL1Q9UBT7 734 aa14.02□□□□□ -0.17
USP40-208ENST00000450966 IPPQ9Y573 584 aa14.02□□□□□ -0.17
USP40-208ENST00000450966 CLTCL1P53675 1640 aa14.02□□□□□ -0.17
USP40-208ENST00000450966 PTPN4P29074 926 aa14.02□□□□□ -0.17
USP40-208ENST00000450966 CASP2P42575 452 aa14.02□□□□□ -0.17
USP40-208ENST00000450966 OLR1P78380 273 aa14.02□□□□□ -0.17
USP40-208ENST00000450966 PTK2BQ14289 1009 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms