RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 MED19A0JLT2 244 aaPredicted RBP18.9■□□□□ 0.62
VPS29-204ENST00000548259 RFPL2O75678 378 aa18.9■□□□□ 0.62
VPS29-204ENST00000548259 STBD1O95210 358 aa18.9■□□□□ 0.62
VPS29-204ENST00000548259 CYP3A7P24462 503 aa18.9■□□□□ 0.62
VPS29-204ENST00000548259 AXLP30530 894 aa18.9■□□□□ 0.62
VPS29-204ENST00000548259 DSG1Q02413 1049 aa18.9■□□□□ 0.62
VPS29-204ENST00000548259 KIAA0319Q5VV43 1072 aa18.9■□□□□ 0.62
VPS29-204ENST00000548259 MOXD1Q6UVY6 613 aa18.9■□□□□ 0.62
VPS29-204ENST00000548259 Q6ZUG5 572 aa18.9■□□□□ 0.62
VPS29-204ENST00000548259 ANO5Q75V66 913 aa18.9■□□□□ 0.62
VPS29-204ENST00000548259 GET4Q7L5D6 327 aaPredicted RBP18.9■□□□□ 0.62
VPS29-204ENST00000548259 COLGALT2Q8IYK4 626 aa18.9■□□□□ 0.62
VPS29-204ENST00000548259 RASEFQ8IZ41 740 aa18.9■□□□□ 0.62
VPS29-204ENST00000548259 GPR161Q8N6U8 529 aaKnown RBP18.9■□□□□ 0.62
VPS29-204ENST00000548259 PRPF31Q8WWY3 499 aaKnown RBP18.9■□□□□ 0.62
VPS29-204ENST00000548259 SECISBP2LQ93073 1101 aaKnown RBP18.9■□□□□ 0.62
VPS29-204ENST00000548259 YTHDC1Q96MU7 727 aaKnown RBP18.9■□□□□ 0.62
VPS29-204ENST00000548259 NT5C3AQ9H0P0 336 aa18.9■□□□□ 0.62
VPS29-204ENST00000548259 SLKQ9H2G2 1235 aaPredicted RBP18.9■□□□□ 0.62
VPS29-204ENST00000548259 IFNAR1P17181 557 aa18.89■□□□□ 0.61
VPS29-204ENST00000548259 AFF1P51825 1210 aaKnown RBP18.89■□□□□ 0.61
VPS29-204ENST00000548259 LAMTOR4Q0VGL1 99 aa18.89■□□□□ 0.61
VPS29-204ENST00000548259 USP41Q3LFD5 358 aa18.89■□□□□ 0.61
VPS29-204ENST00000548259 PLA2G4FQ68DD2 849 aa18.89■□□□□ 0.61
VPS29-204ENST00000548259 NOTUMQ6P988 496 aa18.89■□□□□ 0.61
VPS29-204ENST00000548259 BLOC1S2Q6QNY1 142 aa18.89■□□□□ 0.61
VPS29-204ENST00000548259 OTUD6AQ7L8S5 288 aa18.89■□□□□ 0.61
VPS29-204ENST00000548259 PALB2Q86YC2 1186 aa18.89■□□□□ 0.61
VPS29-204ENST00000548259 PJA1Q8NG27 643 aa18.89■□□□□ 0.61
VPS29-204ENST00000548259 GJA10Q969M2 543 aa18.89■□□□□ 0.61
VPS29-204ENST00000548259 BCO2Q9BYV7 579 aa18.89■□□□□ 0.61
VPS29-204ENST00000548259 PRKD2Q9BZL6 878 aa18.89■□□□□ 0.61
VPS29-204ENST00000548259 TRIM6Q9C030 488 aaPredicted RBP18.89■□□□□ 0.61
VPS29-204ENST00000548259 MARCH5Q9NX47 278 aa18.89■□□□□ 0.61
VPS29-204ENST00000548259 NID2Q14112 1375 aa18.89■□□□□ 0.61
VPS29-204ENST00000548259 ARL5CA6NH57 179 aa18.88■□□□□ 0.61
VPS29-204ENST00000548259 ANHXE9PGG2 379 aa18.88■□□□□ 0.61
VPS29-204ENST00000548259 MYBP10242 640 aa18.88■□□□□ 0.61
VPS29-204ENST00000548259 HOXA11P31270 313 aaPredicted RBP18.88■□□□□ 0.61
VPS29-204ENST00000548259 BMP2KLQ5H9B9 411 aa18.88■□□□□ 0.61
VPS29-204ENST00000548259 B3GNT9Q6UX72 402 aa18.88■□□□□ 0.61
VPS29-204ENST00000548259 TAS1R1Q7RTX1 841 aa18.88■□□□□ 0.61
VPS29-204ENST00000548259 ZNF707Q96C28 371 aaPredicted RBP18.88■□□□□ 0.61
VPS29-204ENST00000548259 FNIP2Q9P278 1114 aa18.88■□□□□ 0.61
VPS29-204ENST00000548259 DDX25Q9UHL0 483 aaKnown RBP18.88■□□□□ 0.61
VPS29-204ENST00000548259 PCDHA4Q9UN74 947 aa18.88■□□□□ 0.61
VPS29-204ENST00000548259 SPTLC1O15269 473 aa18.87■□□□□ 0.61
VPS29-204ENST00000548259 LAMTOR5O43504 91 aa18.87■□□□□ 0.61
VPS29-204ENST00000548259 TGM5O43548 720 aa18.87■□□□□ 0.61
VPS29-204ENST00000548259 PAPLNO95428 1278 aa18.87■□□□□ 0.61
VPS29-204ENST00000548259 TDP2O95551 362 aa18.87■□□□□ 0.61
VPS29-204ENST00000548259 P4HBP07237 508 aaKnown RBP18.87■□□□□ 0.61
VPS29-204ENST00000548259 SPATA31D3P0C874 917 aa18.87■□□□□ 0.61
VPS29-204ENST00000548259 FSHRP23945 695 aa18.87■□□□□ 0.61
VPS29-204ENST00000548259 MLH1P40692 756 aa18.87■□□□□ 0.61
VPS29-204ENST00000548259 HTR4Q13639 388 aa18.87■□□□□ 0.61
VPS29-204ENST00000548259 UBXN11Q5T124 520 aa18.87■□□□□ 0.61
VPS29-204ENST00000548259 GALNT17Q6IS24 598 aa18.87■□□□□ 0.61
VPS29-204ENST00000548259 SPATA31D4Q6ZUB0 917 aa18.87■□□□□ 0.61
VPS29-204ENST00000548259 MTSS1LQ765P7 747 aa18.87■□□□□ 0.61
VPS29-204ENST00000548259 FAM177A1Q8N128 213 aaPredicted RBP18.87■□□□□ 0.61
VPS29-204ENST00000548259 RNF149Q8NC42 400 aa18.87■□□□□ 0.61
VPS29-204ENST00000548259 TMEM143Q96AN5 459 aa18.87■□□□□ 0.61
VPS29-204ENST00000548259 JAKMIP1Q96N16 626 aaKnown RBP18.87■□□□□ 0.61
VPS29-204ENST00000548259 GAD1Q99259 594 aa18.87■□□□□ 0.61
VPS29-204ENST00000548259 DHX33Q9H6R0 707 aaKnown RBP18.87■□□□□ 0.61
VPS29-204ENST00000548259 CHST7Q9NS84 486 aa18.87■□□□□ 0.61
VPS29-204ENST00000548259 DLL3Q9NYJ7 618 aa18.87■□□□□ 0.61
VPS29-204ENST00000548259 DLGAP2Q9P1A6 1054 aa18.87■□□□□ 0.61
VPS29-204ENST00000548259 NCDNQ9UBB6 729 aa18.87■□□□□ 0.61
VPS29-204ENST00000548259 GIT1Q9Y2X7 761 aa18.87■□□□□ 0.61
VPS29-204ENST00000548259 IPPQ9Y573 584 aa18.87■□□□□ 0.61
VPS29-204ENST00000548259 NUMBLQ9Y6R0 609 aa18.87■□□□□ 0.61
VPS29-204ENST00000548259 MARCH6O60337 910 aa18.86■□□□□ 0.61
VPS29-204ENST00000548259 MAGEA9P43362 315 aa18.86■□□□□ 0.61
VPS29-204ENST00000548259 NPEPPSP55786 919 aa18.86■□□□□ 0.61
VPS29-204ENST00000548259 STARD6P59095 220 aa18.86■□□□□ 0.61
VPS29-204ENST00000548259 PFKPQ01813 784 aa18.86■□□□□ 0.61
VPS29-204ENST00000548259 DSC1Q08554 894 aa18.86■□□□□ 0.61
VPS29-204ENST00000548259 TFDP1Q14186 410 aa18.86■□□□□ 0.61
VPS29-204ENST00000548259 MXD4Q14582 209 aaPredicted RBP18.86■□□□□ 0.61
VPS29-204ENST00000548259 ZNF528Q3MIS6 628 aa18.86■□□□□ 0.61
VPS29-204ENST00000548259 LIN9Q5TKA1 542 aa18.86■□□□□ 0.61
VPS29-204ENST00000548259 RNF168Q8IYW5 571 aaPredicted RBP18.86■□□□□ 0.61
VPS29-204ENST00000548259 BLIDQ8IZY5 108 aa18.86■□□□□ 0.61
VPS29-204ENST00000548259 FBXL16Q8N461 479 aa18.86■□□□□ 0.61
VPS29-204ENST00000548259 ETNPPLQ8TBG4 499 aa18.86■□□□□ 0.61
VPS29-204ENST00000548259 ATRIPQ8WXE1 791 aa18.86■□□□□ 0.61
VPS29-204ENST00000548259 FAM20AQ96MK3 541 aa18.86■□□□□ 0.61
VPS29-204ENST00000548259 SPATA6Q9NWH7 488 aaPredicted RBP18.86■□□□□ 0.61
VPS29-204ENST00000548259 FBXO4Q9UKT5 387 aa18.86■□□□□ 0.61
VPS29-204ENST00000548259 DMXL1Q9Y485 3027 aa18.85■□□□□ 0.61
VPS29-204ENST00000548259 KANSL1LA0AUZ9 987 aa18.85■□□□□ 0.61
VPS29-204ENST00000548259 EDIL3O43854 480 aa18.85■□□□□ 0.61
VPS29-204ENST00000548259 TADA2AO75478 443 aa18.85■□□□□ 0.61
VPS29-204ENST00000548259 ZMYND10O75800 440 aa18.85■□□□□ 0.61
VPS29-204ENST00000548259 SCNN1GP51170 649 aa18.85■□□□□ 0.61
VPS29-204ENST00000548259 PRKCQQ04759 706 aa18.85■□□□□ 0.61
VPS29-204ENST00000548259 SSRP1Q08945 709 aaKnown RBP18.85■□□□□ 0.61
VPS29-204ENST00000548259 PPP2R5CQ13362 524 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 663.5 ms