RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 CAMSAP3Q9P1Y5 1249 aaPredicted RBP7.16□□□□□ -1.26
VPS29-210ENST00000552130 CFDP1Q9UEE9 299 aaPredicted RBP7.16□□□□□ -1.26
VPS29-210ENST00000552130 XPO7Q9UIA9 1087 aaKnown RBP7.16□□□□□ -1.26
VPS29-210ENST00000552130 L1RE1Q9UN81 338 aa7.16□□□□□ -1.26
VPS29-210ENST00000552130 MAGED2Q9UNF1 606 aaPredicted RBP7.16□□□□□ -1.26
VPS29-210ENST00000552130 RABL2BQ9UNT1 228 aa7.16□□□□□ -1.26
VPS29-210ENST00000552130 PCDHA9Q9Y5H5 950 aa7.16□□□□□ -1.26
VPS29-210ENST00000552130 TACC3Q9Y6A5 838 aa7.16□□□□□ -1.26
VPS29-210ENST00000552130 A0A0G2JLL6 359 aaPredicted RBP7.15□□□□□ -1.26
VPS29-210ENST00000552130 MYOCOSA0A1B0GUC4 107 aa7.15□□□□□ -1.26
VPS29-210ENST00000552130 HTATSF1O43719 755 aaKnown RBP7.15□□□□□ -1.26
VPS29-210ENST00000552130 B3GALT2O43825 422 aa7.15□□□□□ -1.26
VPS29-210ENST00000552130 TP53P04637 393 aaPredicted RBP7.15□□□□□ -1.26
VPS29-210ENST00000552130 POLBP06746 335 aa7.15□□□□□ -1.26
VPS29-210ENST00000552130 ATP2A2P16615 1042 aaKnown RBP7.15□□□□□ -1.26
VPS29-210ENST00000552130 ATF7P17544 494 aaPredicted RBP7.15□□□□□ -1.26
VPS29-210ENST00000552130 TRHRP34981 398 aaPredicted RBP7.15□□□□□ -1.26
VPS29-210ENST00000552130 LIFRP42702 1097 aa7.15□□□□□ -1.26
VPS29-210ENST00000552130 ZNF132P52740 706 aa7.15□□□□□ -1.26
VPS29-210ENST00000552130 PKN2Q16513 984 aaKnown RBP7.15□□□□□ -1.26
VPS29-210ENST00000552130 ISM2Q6H9L7 571 aa7.15□□□□□ -1.26
VPS29-210ENST00000552130 MILR1Q7Z6M3 343 aa7.15□□□□□ -1.26
VPS29-210ENST00000552130 CDH24Q86UP0 819 aa7.15□□□□□ -1.26
VPS29-210ENST00000552130 GALNT13Q8IUC8 556 aa7.15□□□□□ -1.26
VPS29-210ENST00000552130 MRPL41Q8IXM3 137 aaKnown RBP7.15□□□□□ -1.26
VPS29-210ENST00000552130 CEP57L1Q8IYX8 460 aa7.15□□□□□ -1.26
VPS29-210ENST00000552130 ZNF513Q8N8E2 541 aaPredicted RBP7.15□□□□□ -1.26
VPS29-210ENST00000552130 ZNF527Q8NB42 609 aa7.15□□□□□ -1.26
VPS29-210ENST00000552130 UCMAQ8WVF2 138 aa7.15□□□□□ -1.26
VPS29-210ENST00000552130 ASB12Q8WXK4 309 aa7.15□□□□□ -1.26
VPS29-210ENST00000552130 JADE3Q92613 823 aa7.15□□□□□ -1.26
VPS29-210ENST00000552130 TMEM41AQ96HV5 264 aa7.15□□□□□ -1.26
VPS29-210ENST00000552130 DHRS1Q96LJ7 313 aa7.15□□□□□ -1.26
VPS29-210ENST00000552130 FGD4Q96M96 766 aa7.15□□□□□ -1.26
VPS29-210ENST00000552130 KCNC2Q96PR1 638 aa7.15□□□□□ -1.26
VPS29-210ENST00000552130 CABP5Q9NP86 173 aa7.15□□□□□ -1.26
VPS29-210ENST00000552130 ZNF277Q9NRM2 450 aaPredicted RBP7.15□□□□□ -1.26
VPS29-210ENST00000552130 OLA1Q9NTK5 396 aaKnown RBP7.15□□□□□ -1.26
VPS29-210ENST00000552130 PDRG1Q9NUG6 133 aa7.15□□□□□ -1.26
VPS29-210ENST00000552130 GRHPRQ9UBQ7 328 aa7.15□□□□□ -1.26
VPS29-210ENST00000552130 KLHL3Q9UH77 587 aa7.15□□□□□ -1.26
VPS29-210ENST00000552130 SLC13A4Q9UKG4 626 aa7.15□□□□□ -1.26
VPS29-210ENST00000552130 TRAF6Q9Y4K3 522 aa7.15□□□□□ -1.26
VPS29-210ENST00000552130 PCDHGB2Q9Y5G2 931 aa7.15□□□□□ -1.26
VPS29-210ENST00000552130 RHPN2P1A8MT19 583 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 TISP43B9A030 160 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 B9A039 149 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 TRAF5O00463 557 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 IRAK2O43187 625 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 MGEA5O60502 916 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 PEX10O60683 326 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 UBXN7O94888 489 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 ZGLP1P0C6A0 271 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 VEGFAP15692 232 aaPredicted RBP7.14□□□□□ -1.27
VPS29-210ENST00000552130 XBP1P17861 261 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 PLCG1P19174 1290 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 GRK4P32298 578 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 ATP6V1E1P36543 226 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 MAN2A2P49641 1150 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 DRG2P55039 364 aaKnown RBP7.14□□□□□ -1.27
VPS29-210ENST00000552130 DLG4P78352 724 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 STARD3Q14849 445 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 POSTNQ15063 836 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 NR0B2Q15466 257 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 TAF5Q15542 800 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 HSF5Q4G112 596 aaPredicted RBP7.14□□□□□ -1.27
VPS29-210ENST00000552130 TDRD10Q5VZ19 366 aaKnown RBP7.14□□□□□ -1.27
VPS29-210ENST00000552130 CMIPQ8IY22 773 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 CACNA2D3Q8IZS8 1091 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 LILRA2Q8N149 483 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 IGSF22Q8N9C0 903 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 PDZD8Q8NEN9 1154 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 DNAJB8Q8NHS0 232 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 SSH3Q8TE77 659 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 KCTD13Q8WZ19 329 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 C1GALT1C1Q96EU7 318 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 HIC2Q96JB3 615 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 ADPGKQ9BRR6 497 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 KLHL25Q9H0H3 589 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 CCDC68Q9H2F9 335 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 CYP26B1Q9NR63 512 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 EPS15L1Q9UBC2 864 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 B4GALT6Q9UBX8 382 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 AASSQ9UDR5 926 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 TJP2Q9UDY2 1190 aa7.14□□□□□ -1.27
VPS29-210ENST00000552130 A0A087X0M5 115 aa7.13□□□□□ -1.27
VPS29-210ENST00000552130 A0A1B0GX30 115 aa7.13□□□□□ -1.27
VPS29-210ENST00000552130 F5H0A9 414 aaPredicted RBP7.13□□□□□ -1.27
VPS29-210ENST00000552130 NOP56O00567 594 aaKnown RBP7.13□□□□□ -1.27
VPS29-210ENST00000552130 MYCLP12524 364 aaPredicted RBP7.13□□□□□ -1.27
VPS29-210ENST00000552130 ATP6V1B1P15313 513 aa7.13□□□□□ -1.27
VPS29-210ENST00000552130 GPR3P46089 330 aa7.13□□□□□ -1.27
VPS29-210ENST00000552130 PAPOLAP51003 745 aaKnown RBP7.13□□□□□ -1.27
VPS29-210ENST00000552130 FXR1P51114 621 aaKnown RBP eCLIP7.13□□□□□ -1.27
VPS29-210ENST00000552130 ADKP55263 362 aaKnown RBP7.13□□□□□ -1.27
VPS29-210ENST00000552130 TMF1P82094 1093 aa7.13□□□□□ -1.27
VPS29-210ENST00000552130 GUCY1A3Q02108 690 aa7.13□□□□□ -1.27
VPS29-210ENST00000552130 ANKRD45Q5TZF3 282 aa7.13□□□□□ -1.27
VPS29-210ENST00000552130 BROXQ5VW32 411 aa7.13□□□□□ -1.27
VPS29-210ENST00000552130 CATSPER4Q7RTX7 472 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms