RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 BACH1O14867 736 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 P4HA2O15460 535 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 GDF11O95390 407 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 NR3C1P04150 777 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 PRLRP16471 622 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 CTNNA2P26232 953 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 CUL3Q13618 768 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 MSL1Q68DK7 614 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 CCDC50Q8IVM0 306 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 NACC2Q96BF6 587 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 NACC1Q96RE7 527 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 TSC22D3Q99576 134 aa11.2□□□□□ -0.62
LIG1-220ENST00000601091 KRT5P13647 590 aa11.19□□□□□ -0.62
LIG1-220ENST00000601091 NEK2P51955 445 aa11.19□□□□□ -0.62
LIG1-220ENST00000601091 PDCLQ13371 301 aa11.19□□□□□ -0.62
LIG1-220ENST00000601091 MEA1Q16626 185 aa11.19□□□□□ -0.62
LIG1-220ENST00000601091 MIER3Q7Z3K6 550 aa11.19□□□□□ -0.62
LIG1-220ENST00000601091 CLEC10AQ8IUN9 316 aa11.19□□□□□ -0.62
LIG1-220ENST00000601091 SH2D3CQ8N5H7 860 aa11.19□□□□□ -0.62
LIG1-220ENST00000601091 TBC1D16Q8TBP0 767 aa11.19□□□□□ -0.62
LIG1-220ENST00000601091 MED15Q96RN5 788 aa11.19□□□□□ -0.62
LIG1-220ENST00000601091 DBNDD1Q9H9R9 158 aa11.19□□□□□ -0.62
LIG1-220ENST00000601091 PACSIN2Q9UNF0 486 aaPredicted RBP11.19□□□□□ -0.62
LIG1-220ENST00000601091 SFI1A8K8P3 1242 aa11.19□□□□□ -0.62
LIG1-220ENST00000601091 SLC37A4O43826 429 aa11.19□□□□□ -0.62
LIG1-220ENST00000601091 EEF2P13639 858 aaKnown RBP11.19□□□□□ -0.62
LIG1-220ENST00000601091 HOXA13P31271 388 aaPredicted RBP11.19□□□□□ -0.62
LIG1-220ENST00000601091 STAT3P40763 770 aa11.19□□□□□ -0.62
LIG1-220ENST00000601091 TMEM179Q6ZVK1 233 aa11.19□□□□□ -0.62
LIG1-220ENST00000601091 ZNF280CQ8ND82 737 aa11.19□□□□□ -0.62
LIG1-220ENST00000601091 ZNF507Q8TCN5 953 aa11.19□□□□□ -0.62
LIG1-220ENST00000601091 MS4A14Q96JA4 679 aa11.19□□□□□ -0.62
LIG1-220ENST00000601091 TEKT3Q9BXF9 490 aa11.19□□□□□ -0.62
LIG1-220ENST00000601091 WDR11Q9BZH6 1224 aa11.19□□□□□ -0.62
LIG1-220ENST00000601091 JMJD4Q9H9V9 463 aa11.19□□□□□ -0.62
LIG1-220ENST00000601091 KCNK9Q9NPC2 374 aa11.19□□□□□ -0.62
LIG1-220ENST00000601091 SCHIP1Q9P0W5 487 aaPredicted RBP11.19□□□□□ -0.62
LIG1-220ENST00000601091 DAAM1Q9Y4D1 1078 aa11.19□□□□□ -0.62
LIG1-220ENST00000601091 CAPN6Q9Y6Q1 641 aa11.19□□□□□ -0.62
LIG1-220ENST00000601091 A0A1W2PRG0 241 aa11.19□□□□□ -0.62
LIG1-220ENST00000601091 K7ENM7 598 aa11.19□□□□□ -0.62
LIG1-220ENST00000601091 RGS16O15492 202 aaPredicted RBP11.19□□□□□ -0.62
LIG1-220ENST00000601091 MYL7Q01449 175 aa11.19□□□□□ -0.62
LIG1-220ENST00000601091 COL19A1Q14993 1142 aa11.19□□□□□ -0.62
LIG1-220ENST00000601091 EZH2Q15910 746 aaKnown RBP11.19□□□□□ -0.62
LIG1-220ENST00000601091 GSTA5Q7RTV2 222 aa11.19□□□□□ -0.62
LIG1-220ENST00000601091 FRMD5Q7Z6J6 570 aa11.19□□□□□ -0.62
LIG1-220ENST00000601091 FAM9CQ8IZT9 166 aa11.19□□□□□ -0.62
LIG1-220ENST00000601091 CPXCR1Q8N123 301 aa11.19□□□□□ -0.62
LIG1-220ENST00000601091 NR1H4Q96RI1 486 aaPredicted RBP11.19□□□□□ -0.62
LIG1-220ENST00000601091 AS3MTQ9HBK9 375 aa11.19□□□□□ -0.62
LIG1-220ENST00000601091 TYW1Q9NV66 732 aaKnown RBP11.19□□□□□ -0.62
LIG1-220ENST00000601091 ARHGAP20Q9P2F6 1191 aa11.19□□□□□ -0.62
LIG1-220ENST00000601091 KLRC4O43908 158 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 CDC25CP30307 473 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 SNAP25P60880 206 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 DHX9Q08211 1270 aaKnown RBP11.18□□□□□ -0.62
LIG1-220ENST00000601091 MRPL28Q13084 256 aaKnown RBP11.18□□□□□ -0.62
LIG1-220ENST00000601091 PRR5LQ6MZQ0 368 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 CACNA2D3Q8IZS8 1091 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 GSDMBQ8TAX9 411 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 MAK16Q9BXY0 300 aaKnown RBP11.18□□□□□ -0.62
LIG1-220ENST00000601091 RBM12Q9NTZ6 932 aaKnown RBP11.18□□□□□ -0.62
LIG1-220ENST00000601091 SPO11Q9Y5K1 396 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 HARSP12081 509 aaKnown RBP11.18□□□□□ -0.62
LIG1-220ENST00000601091 CACNB3P54284 484 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 EVX2Q03828 476 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 KCTD2Q14681 263 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 EDRF1Q3B7T1 1238 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 TAOK1Q7L7X3 1001 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 KIAA0895Q8NCT3 520 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 SUN5Q8TC36 379 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 PIGOQ8TEQ8 1089 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 SYN2Q92777 582 aaPredicted RBP11.18□□□□□ -0.62
LIG1-220ENST00000601091 IER2Q9BTL4 223 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 ASIC3Q9UHC3 531 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 PLAAQ9Y263 795 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 F5H6K3 240 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 ATP5DP30049 168 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 KLRC3Q07444 240 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 CTTNQ14247 550 aaKnown RBP11.18□□□□□ -0.62
LIG1-220ENST00000601091 WDR44Q5JSH3 913 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 MAGOHBQ96A72 148 aaKnown RBP11.18□□□□□ -0.62
LIG1-220ENST00000601091 CSRNP1Q96S65 589 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 ZNF577Q9BSK1 485 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 RTFDC1Q9BY42 306 aaPredicted RBP11.18□□□□□ -0.62
LIG1-220ENST00000601091 CARD8Q9Y2G2 431 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 NPHP3-ACAD11A0A0J9YXS1 232 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 FAM196BA6NMK8 535 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 H0Y3Z8 333 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 PDXKO00764 312 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 LRRN2O75325 713 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 MYBL1P10243 752 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 GJC1P36383 396 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 PAPOLAP51003 745 aaKnown RBP11.18□□□□□ -0.62
LIG1-220ENST00000601091 UBXN2AP68543 259 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 TSPY1Q01534 308 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 THOC7Q6I9Y2 204 aaKnown RBP11.18□□□□□ -0.62
LIG1-220ENST00000601091 IRF2BP1Q8IU81 584 aa11.18□□□□□ -0.62
LIG1-220ENST00000601091 DHX38Q92620 1227 aaKnown RBP11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms