RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 GRIN1Q05586 938 aa19.12■□□□□ 0.65
SHKBP1-212ENST00000596163 C1orf186Q6ZWK4 172 aa19.12■□□□□ 0.65
SHKBP1-212ENST00000596163 KCNK18Q7Z418 384 aa19.12■□□□□ 0.65
SHKBP1-212ENST00000596163 ECHDC2Q86YB7 292 aa19.12■□□□□ 0.65
SHKBP1-212ENST00000596163 MYLIPQ8WY64 445 aa19.12■□□□□ 0.65
SHKBP1-212ENST00000596163 RSPH1Q8WYR4 309 aa19.12■□□□□ 0.65
SHKBP1-212ENST00000596163 CCDC51Q96ER9 411 aa19.12■□□□□ 0.65
SHKBP1-212ENST00000596163 MINDY3Q9H8M7 445 aa19.12■□□□□ 0.65
SHKBP1-212ENST00000596163 CERS4Q9HA82 394 aa19.12■□□□□ 0.65
SHKBP1-212ENST00000596163 C17orf75Q9HAS0 396 aa19.12■□□□□ 0.65
SHKBP1-212ENST00000596163 PRMT7Q9NVM4 692 aaPredicted RBP19.12■□□□□ 0.65
SHKBP1-212ENST00000596163 DAXXQ9UER7 740 aaPredicted RBP19.12■□□□□ 0.65
SHKBP1-212ENST00000596163 ATP6V1DQ9Y5K8 247 aa19.12■□□□□ 0.65
SHKBP1-212ENST00000596163 SZT2Q5T011 3432 aa19.11■□□□□ 0.65
SHKBP1-212ENST00000596163 EFNA5P52803 228 aa19.11■□□□□ 0.65
SHKBP1-212ENST00000596163 MBTD1Q05BQ5 628 aa19.11■□□□□ 0.65
SHKBP1-212ENST00000596163 ABI1Q8IZP0 508 aa19.11■□□□□ 0.65
SHKBP1-212ENST00000596163 KCNG4Q8TDN1 519 aa19.11■□□□□ 0.65
SHKBP1-212ENST00000596163 PGBD4Q96DM1 585 aa19.11■□□□□ 0.65
SHKBP1-212ENST00000596163 PRIMPOLQ96LW4 560 aa19.11■□□□□ 0.65
SHKBP1-212ENST00000596163 PHLPP2Q6ZVD8 1323 aa19.1■□□□□ 0.65
SHKBP1-212ENST00000596163 ZNF623O75123 536 aa19.1■□□□□ 0.65
SHKBP1-212ENST00000596163 ARHGEF15O94989 841 aa19.1■□□□□ 0.65
SHKBP1-212ENST00000596163 BRD1O95696 1058 aa19.1■□□□□ 0.65
SHKBP1-212ENST00000596163 RB1P06400 928 aa19.1■□□□□ 0.65
SHKBP1-212ENST00000596163 PLCG1P19174 1290 aa19.1■□□□□ 0.65
SHKBP1-212ENST00000596163 DDIT3P35638 169 aa19.1■□□□□ 0.65
SHKBP1-212ENST00000596163 SLC12A3P55017 1021 aa19.1■□□□□ 0.65
SHKBP1-212ENST00000596163 KARSQ15046 597 aaKnown RBP19.1■□□□□ 0.65
SHKBP1-212ENST00000596163 FOXD4L6Q3SYB3 417 aaPredicted RBP19.1■□□□□ 0.65
SHKBP1-212ENST00000596163 CDCA2Q69YH5 1023 aaPredicted RBP19.1■□□□□ 0.65
SHKBP1-212ENST00000596163 NOTUMQ6P988 496 aa19.1■□□□□ 0.65
SHKBP1-212ENST00000596163 FOXD4L3Q6VB84 417 aaPredicted RBP19.1■□□□□ 0.65
SHKBP1-212ENST00000596163 TMEM192Q8IY95 271 aa19.1■□□□□ 0.65
SHKBP1-212ENST00000596163 RNF169Q8NCN4 708 aa19.1■□□□□ 0.65
SHKBP1-212ENST00000596163 CNNM3Q8NE01 707 aa19.1■□□□□ 0.65
SHKBP1-212ENST00000596163 SYMPKQ92797 1274 aaKnown RBP19.1■□□□□ 0.65
SHKBP1-212ENST00000596163 EPSTI1Q96J88 318 aa19.1■□□□□ 0.65
SHKBP1-212ENST00000596163 CLIC6Q96NY7 704 aa19.1■□□□□ 0.65
SHKBP1-212ENST00000596163 RUSC1Q9BVN2 902 aa19.1■□□□□ 0.65
SHKBP1-212ENST00000596163 TMEM117Q9H0C3 514 aa19.1■□□□□ 0.65
SHKBP1-212ENST00000596163 RC3H2Q9HBD1 1191 aaKnown RBP19.1■□□□□ 0.65
SHKBP1-212ENST00000596163 FAM105AQ9NUU6 356 aa19.1■□□□□ 0.65
SHKBP1-212ENST00000596163 TTC3P53804 2025 aa19.09■□□□□ 0.65
SHKBP1-212ENST00000596163 TBKBP1A7MCY6 615 aa19.09■□□□□ 0.65
SHKBP1-212ENST00000596163 GTPBP6O43824 516 aaPredicted RBP19.09■□□□□ 0.65
SHKBP1-212ENST00000596163 TSPAN1O60635 241 aa19.09■□□□□ 0.65
SHKBP1-212ENST00000596163 HIP1RO75146 1068 aa19.09■□□□□ 0.65
SHKBP1-212ENST00000596163 HOXA11P31270 313 aaPredicted RBP19.09■□□□□ 0.65
SHKBP1-212ENST00000596163 DMP1Q13316 513 aaPredicted RBP19.09■□□□□ 0.65
SHKBP1-212ENST00000596163 PKP1Q13835 747 aa19.09■□□□□ 0.65
SHKBP1-212ENST00000596163 MAPK6Q16659 721 aa19.09■□□□□ 0.65
SHKBP1-212ENST00000596163 FAM187BQ17R55 369 aa19.09■□□□□ 0.65
SHKBP1-212ENST00000596163 SPECC1Q5M775 1068 aa19.09■□□□□ 0.65
SHKBP1-212ENST00000596163 RRAGBQ5VZM2 374 aa19.09■□□□□ 0.65
SHKBP1-212ENST00000596163 PPP4R3CPQ6ZMV5 832 aa19.09■□□□□ 0.65
SHKBP1-212ENST00000596163 CCDC73Q6ZRK6 1079 aa19.09■□□□□ 0.65
SHKBP1-212ENST00000596163 FBXO22Q8NEZ5 403 aa19.09■□□□□ 0.65
SHKBP1-212ENST00000596163 LARP4BQ92615 738 aaKnown RBP19.09■□□□□ 0.65
SHKBP1-212ENST00000596163 RAD54LQ92698 747 aa19.09■□□□□ 0.65
SHKBP1-212ENST00000596163 AAASQ9NRG9 546 aa19.09■□□□□ 0.65
SHKBP1-212ENST00000596163 STK17AQ9UEE5 414 aa19.09■□□□□ 0.65
SHKBP1-212ENST00000596163 MTUS1Q9ULD2 1270 aa19.09■□□□□ 0.65
SHKBP1-212ENST00000596163 RBM19Q9Y4C8 960 aaKnown RBP19.09■□□□□ 0.65
SHKBP1-212ENST00000596163 CCDC169A6NNP5 214 aa19.08■□□□□ 0.64
SHKBP1-212ENST00000596163 CUTAO60888 179 aa19.08■□□□□ 0.64
SHKBP1-212ENST00000596163 IGFBP4P22692 258 aa19.08■□□□□ 0.64
SHKBP1-212ENST00000596163 BMPR1AP36894 532 aa19.08■□□□□ 0.64
SHKBP1-212ENST00000596163 SMTNP53814 917 aa19.08■□□□□ 0.64
SHKBP1-212ENST00000596163 TMEM132AQ24JP5 1023 aa19.08■□□□□ 0.64
SHKBP1-212ENST00000596163 PAN2Q504Q3 1202 aaKnown RBP19.08■□□□□ 0.64
SHKBP1-212ENST00000596163 EPC2Q52LR7 807 aa19.08■□□□□ 0.64
SHKBP1-212ENST00000596163 GPBP1Q86WP2 473 aa19.08■□□□□ 0.64
SHKBP1-212ENST00000596163 HACE1Q8IYU2 909 aa19.08■□□□□ 0.64
SHKBP1-212ENST00000596163 BSNDQ8WZ55 320 aa19.08■□□□□ 0.64
SHKBP1-212ENST00000596163 CLP1Q92989 425 aaKnown RBP19.08■□□□□ 0.64
SHKBP1-212ENST00000596163 C17orf80Q9BSJ5 609 aa19.08■□□□□ 0.64
SHKBP1-212ENST00000596163 FZD8Q9H461 694 aa19.08■□□□□ 0.64
SHKBP1-212ENST00000596163 LMCD1Q9NZU5 365 aa19.08■□□□□ 0.64
SHKBP1-212ENST00000596163 PCDHB2Q9Y5E7 798 aa19.08■□□□□ 0.64
SHKBP1-212ENST00000596163 COL4A6Q14031 1691 aa19.08■□□□□ 0.64
SHKBP1-212ENST00000596163 ARID2Q68CP9 1835 aa19.07■□□□□ 0.64
SHKBP1-212ENST00000596163 K7ERI5 159 aa19.07■□□□□ 0.64
SHKBP1-212ENST00000596163 KRT18P05783 430 aaKnown RBP19.07■□□□□ 0.64
SHKBP1-212ENST00000596163 FGFR1P11362 822 aa19.07■□□□□ 0.64
SHKBP1-212ENST00000596163 PEX3P56589 373 aa19.07■□□□□ 0.64
SHKBP1-212ENST00000596163 DHX8Q14562 1220 aaKnown RBP19.07■□□□□ 0.64
SHKBP1-212ENST00000596163 AMHR2Q16671 573 aa19.07■□□□□ 0.64
SHKBP1-212ENST00000596163 NAALADL2Q58DX5 795 aa19.07■□□□□ 0.64
SHKBP1-212ENST00000596163 SPOUT1Q5T280 376 aaKnown RBP19.07■□□□□ 0.64
SHKBP1-212ENST00000596163 USP49Q70CQ1 688 aa19.07■□□□□ 0.64
SHKBP1-212ENST00000596163 ZNF598Q86UK7 904 aaKnown RBP19.07■□□□□ 0.64
SHKBP1-212ENST00000596163 PLVAPQ9BX97 442 aa19.07■□□□□ 0.64
SHKBP1-212ENST00000596163 MRPL9Q9BYD2 267 aaKnown RBP19.07■□□□□ 0.64
SHKBP1-212ENST00000596163 TRIM6Q9C030 488 aaPredicted RBP19.07■□□□□ 0.64
SHKBP1-212ENST00000596163 POLD4Q9HCU8 107 aa19.07■□□□□ 0.64
SHKBP1-212ENST00000596163 UBN1Q9NPG3 1134 aa19.07■□□□□ 0.64
SHKBP1-212ENST00000596163 KMT5AQ9NQR1 393 aa19.07■□□□□ 0.64
SHKBP1-212ENST00000596163 BLOC1S4Q9NUP1 217 aa19.07■□□□□ 0.64
SHKBP1-212ENST00000596163 LARSQ9P2J5 1176 aaKnown RBP19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms