RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 MTA3Q9BTC8 594 aa7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 ARMC7Q9H6L4 198 aa7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 DMAP1Q9NPF5 467 aaPredicted RBP7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 PACSIN3Q9UKS6 424 aa7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 LIN7AO14910 233 aaPredicted RBP7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 SKIP12755 728 aa7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 CHKAP35790 457 aa7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 IL15P40933 162 aaPredicted RBP7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 EPS15P42566 896 aa7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 HIRAP54198 1017 aaPredicted RBP7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 ATP2C1P98194 919 aaPredicted RBP7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 MTMR3Q13615 1198 aa7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 CTTNQ14247 550 aaKnown RBP7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 SETDB1Q15047 1291 aa7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 TRIM67Q6ZTA4 783 aa7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 TTC7BQ86TV6 843 aa7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 IFNLR1Q8IU57 520 aaPredicted RBP7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 THEMISQ8N1K5 641 aaPredicted RBP7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 SRBD1Q8N5C6 995 aaKnown RBP7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 RNF169Q8NCN4 708 aa7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 MORC4Q8TE76 937 aa7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 ZFAND2BQ8WV99 257 aa7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 RPGRQ92834 1020 aaKnown RBP7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 STRBPQ96SI9 672 aaKnown RBP7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 SHCBP1LQ9BZQ2 653 aa7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 FBXO6Q9NRD1 293 aaPredicted RBP7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 INIPQ9NRY2 104 aa7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 ARMCX3Q9UH62 379 aaPredicted RBP7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 CHD2O14647 1828 aaKnown RBP7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 NEXMIFQ5QGS0 1516 aa7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 A0A1W2PRG0 241 aa7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 SORBS2O94875 1100 aaKnown RBP7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 MYBP10242 640 aa7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 ZNF24P17028 368 aa7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 NELFEP18615 380 aaKnown RBP7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 GRIA2P42262 883 aa7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 RASSF2P50749 326 aa7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 DYNC1I2Q13409 638 aaKnown RBP7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 LBRQ14739 615 aaKnown RBP7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 SEPT2Q15019 361 aa7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 NPY5RQ15761 445 aa7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 LPCAT4Q643R3 524 aa7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 PHLDB3Q6NSJ2 640 aa7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 ALKBH5Q6P6C2 394 aaKnown RBP7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 ZNF790Q6PG37 636 aa7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 LRRC74BQ6ZQY2 392 aa7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 NANOGNBQ7Z5D8 188 aa7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 CTNNBL1Q8WYA6 563 aaPredicted RBP7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 TMEM87BQ96K49 555 aa7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 PHF20Q9BVI0 1012 aa7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 KRT82Q9NSB4 513 aa7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 IVNS1ABPQ9Y6Y0 642 aa7.8□□□□□ -1.16
LIMCH1-207ENST00000508466 PFASO15067 1338 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 PALM3A6NDB9 673 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 POC1B-GALNT4F8VUJ3 575 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 SPTLC1O15269 473 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 HARSP12081 509 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 NFKBIAP25963 317 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 ADD2P35612 726 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 VHLP40337 213 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 RXRGP48443 463 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 CD300CQ08708 224 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 TMED2Q15363 201 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 DCAF17Q5H9S7 520 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 DCAF12L1Q5VU92 463 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 LRRC8BQ6P9F7 803 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 ZDHHC24Q6UX98 284 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 LDHAL6AQ6ZMR3 332 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 JAMLQ86YT9 394 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 CCDC105Q8IYK2 499 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 ZDHHC14Q8IZN3 488 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 SLC7A5P1Q8MH63 180 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 VPS52Q8N1B4 723 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 PDCD7Q8N8D1 485 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 RIN3Q8TB24 985 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 C1orf54Q8WWF1 131 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 KRT35Q92764 455 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 PTPRN2Q92932 1015 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 IFT43Q96FT9 208 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 RAB3IPQ96QF0 476 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 NUP85Q9BW27 656 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 CADM1Q9BY67 442 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 EBF3Q9H4W6 596 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 ACP6Q9NPH0 428 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 CNNM1Q9NRU3 951 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 TMEM59LQ9UK28 342 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 AJAP1Q9UKB5 411 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 ZBTB21Q9ULJ3 1066 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 NRKQ7Z2Y5 1582 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 IFT172Q9UG01 1749 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 KIF20BQ96Q89 1820 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 ANKARQ7Z5J8 1434 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 A0A0J9YVX5 310 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 DYTNA2CJ06 578 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 XBP1P17861 261 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 PIK3CAP42336 1068 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 USP11P51784 963 aa7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 ATXN3P54252 364 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-207ENST00000508466 KLRC3Q07444 240 aa7.79□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms